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The map label for this gene is hybF [H]

Identifier: 238917221

GI number: 238917221

Start: 1332240

End: 1332587

Strand: Reverse

Name: hybF [H]

Synonym: EUBELI_01294

Alternate gene names: 238917221

Gene position: 1332587-1332240 (Counterclockwise)

Preceding gene: 238917222

Following gene: 238917220

Centisome position: 62.15

GC content: 39.08

Gene sequence:

>348_bases
ATGCATGAATTAGGCGTAGTATTTCACATAATAGATGATCTCAAAGCAGTAGCTTCAGATAATGATGTTTCAAGCATATC
TAAAGTTACAATTGAGCTTGGCGAAGTATCAGGAGTTGTAGAAGAATATCTTACAGACTGCTGGAAGTGGGCTTGCAAGA
AAGAAGCACTTGTAAAGGACTGTGAGATGGAAGTCGAGATAATTCCGGGTATAACTTACTGCGAGGACTGTGGGGAAACT
TATGAGACTGTGAAATACGCCAAAGTCTGTCCGAACTGTGGCAGTAAGCACACATATCTTATTCAGGGCAATGAATTTAA
TATTAAGCAGATTGAAGTTCCTGAATAA

Upstream 100 bases:

>100_bases
CTACAATGAGAAGAAGTGAGGATAAGCTTAAGTACATTCTTCCATATGGTGCAAAGCAGGCAATCAAGATTAAATTCAAA
AAGAAAAAGGACTAAAATGT

Downstream 100 bases:

>100_bases
AATGCTTGCATTTTTTTCTGTCAGATATTAAGATAGAAAAGAATTTTATATTTAAAGGCATTGAAAAAGAGGAGTACATA
TCCTTATCCGACAGAGAGAA

Product: hydrogenase nickel incorporation protein HypA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MHELGVVFHIIDDLKAVASDNDVSSISKVTIELGEVSGVVEEYLTDCWKWACKKEALVKDCEMEVEIIPGITYCEDCGET
YETVKYAKVCPNCGSKHTYLIQGNEFNIKQIEVPE

Sequences:

>Translated_115_residues
MHELGVVFHIIDDLKAVASDNDVSSISKVTIELGEVSGVVEEYLTDCWKWACKKEALVKDCEMEVEIIPGITYCEDCGET
YETVKYAKVCPNCGSKHTYLIQGNEFNIKQIEVPE
>Mature_115_residues
MHELGVVFHIIDDLKAVASDNDVSSISKVTIELGEVSGVVEEYLTDCWKWACKKEALVKDCEMEVEIIPGITYCEDCGET
YETVKYAKVCPNCGSKHTYLIQGNEFNIKQIEVPE

Specific function: Probably plays a role in an hydrogenase nickel cofactor insertion step [H]

COG id: COG0375

COG function: function code R; Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypA/hybF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000688
- InterPro:   IPR020538 [H]

Pfam domain/function: PF01155 HypA [H]

EC number: NA

Molecular weight: Translated: 12908; Mature: 12908

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
6.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHELGVVFHIIDDLKAVASDNDVSSISKVTIELGEVSGVVEEYLTDCWKWACKKEALVKD
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CEMEVEIIPGITYCEDCGETYETVKYAKVCPNCGSKHTYLIQGNEFNIKQIEVPE
CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCC
>Mature Secondary Structure
MHELGVVFHIIDDLKAVASDNDVSSISKVTIELGEVSGVVEEYLTDCWKWACKKEALVKD
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CEMEVEIIPGITYCEDCGETYETVKYAKVCPNCGSKHTYLIQGNEFNIKQIEVPE
CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA