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The map label for this gene is cdaR [H]

Identifier: 238917191

GI number: 238917191

Start: 1297394

End: 1298566

Strand: Reverse

Name: cdaR [H]

Synonym: EUBELI_01264

Alternate gene names: 238917191

Gene position: 1298566-1297394 (Counterclockwise)

Preceding gene: 238917193

Following gene: 238917190

Centisome position: 60.56

GC content: 32.91

Gene sequence:

>1173_bases
ATGCATATATCAAAGAATTCTGCAACTCAGATTGTTGAAGAAATTTCAAAACTTGTTAAACAGAATATTAATCTTATGGA
TGAGACAGGACATATAATTGCAAGTCGTGATAAATCCAGAATAGGGGATTTTCATTATGGTGCGTATAAGATTATATCTG
AAAATCTTGAGGAATATTATATTGATGAAGATGATTTATCAAAAGGCATAAAAAAAGGAATCAATCTTCCACTTGAACTT
GATGGCGGAATAGTAGGAGTGATAGGAATGACAGGTGGATATGAAGAGGTTATAACGTCTGGAAAACTGTTAAAAAAGAT
GACGGAAATTCTTTTGATGGAGAGTCGTGCAAACTATAGACAGCTTATGAATAAGCGTGTAAGGAATGCTTTTTATGAAG
AATGGCTTATAAATGGAGGATATAAGAATGCTGATTTAGAAGACCGTGGAATGGCTTTGGGAATAGATATTAATAAGCCA
AGAAGAGTGTTTATTGCCAGCATAGATGAGTTGGACAACCTTAAAGATTCACAGCAGGGACAGTCTCAGATTGCAAAATT
TGAAAATGATGTTGATGCATTTTTAAAGAGAAATAATTATAAAATGCATTTCAGGAATGCTTCAAGACAGATAATAATCA
TAGATAATATGGATACGGAAAATGTGGTTAAATTTGCAGGAGAGCTGGCAGGATATGTGTGGGAAAAAGATAAGTTTGAG
CTGAATATTGGTATAGATTCAGCCCAAAGCTATGATATGCATGAAGCTTATGTTGAAGCACATAGGGCATGGACGGCTGC
AGCTGAAAAACATGAACAGATTATATGCTATGAGGATATTAGTCTTGAACTTTTAATAAGCAATGTACCGACAGAGATTA
AGCTTGAATATTTAAAGAAGGTATTCAAAGATATGGATTATAATGATGTATGTGAGAATATTGCGTTGCTGAAAGCGTAT
TTTAATGCACAGGGATCAATACAGAAAGCAGCAGACAATCTTTATATTCATAAGAATACATTACAATACAGAATATCAAA
ACTGAAAGAAATAACAGGACTTGATGTCAGGAAACCAACAGAAAGTCCAGCGTTGTATCTGGCATACATAATTACTGATG
AATTAATTAATGAAAAATATGATTTACCATTATTGTTACATAATACAAAATAA

Upstream 100 bases:

>100_bases
ATTCATAAATTTGTATGATTAAAAATGTATGGTACAATAATATATAGAAAGAATATGTGACGGATTCCGTCACATCCTTA
TCAAAGAGGAGGTACATGTT

Downstream 100 bases:

>100_bases
AAATGATATTATGTGCTGTGTAACATTTTGCTATTAAACTTTACATGTTATTATTGTGTCATACAAAGCACAAAGGTTTG
TGCAAACCGTACAACAATAA

Product: carbohydrate diacid regulator

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MHISKNSATQIVEEISKLVKQNINLMDETGHIIASRDKSRIGDFHYGAYKIISENLEEYYIDEDDLSKGIKKGINLPLEL
DGGIVGVIGMTGGYEEVITSGKLLKKMTEILLMESRANYRQLMNKRVRNAFYEEWLINGGYKNADLEDRGMALGIDINKP
RRVFIASIDELDNLKDSQQGQSQIAKFENDVDAFLKRNNYKMHFRNASRQIIIIDNMDTENVVKFAGELAGYVWEKDKFE
LNIGIDSAQSYDMHEAYVEAHRAWTAAAEKHEQIICYEDISLELLISNVPTEIKLEYLKKVFKDMDYNDVCENIALLKAY
FNAQGSIQKAADNLYIHKNTLQYRISKLKEITGLDVRKPTESPALYLAYIITDELINEKYDLPLLLHNTK

Sequences:

>Translated_390_residues
MHISKNSATQIVEEISKLVKQNINLMDETGHIIASRDKSRIGDFHYGAYKIISENLEEYYIDEDDLSKGIKKGINLPLEL
DGGIVGVIGMTGGYEEVITSGKLLKKMTEILLMESRANYRQLMNKRVRNAFYEEWLINGGYKNADLEDRGMALGIDINKP
RRVFIASIDELDNLKDSQQGQSQIAKFENDVDAFLKRNNYKMHFRNASRQIIIIDNMDTENVVKFAGELAGYVWEKDKFE
LNIGIDSAQSYDMHEAYVEAHRAWTAAAEKHEQIICYEDISLELLISNVPTEIKLEYLKKVFKDMDYNDVCENIALLKAY
FNAQGSIQKAADNLYIHKNTLQYRISKLKEITGLDVRKPTESPALYLAYIITDELINEKYDLPLLLHNTK
>Mature_390_residues
MHISKNSATQIVEEISKLVKQNINLMDETGHIIASRDKSRIGDFHYGAYKIISENLEEYYIDEDDLSKGIKKGINLPLEL
DGGIVGVIGMTGGYEEVITSGKLLKKMTEILLMESRANYRQLMNKRVRNAFYEEWLINGGYKNADLEDRGMALGIDINKP
RRVFIASIDELDNLKDSQQGQSQIAKFENDVDAFLKRNNYKMHFRNASRQIIIIDNMDTENVVKFAGELAGYVWEKDKFE
LNIGIDSAQSYDMHEAYVEAHRAWTAAAEKHEQIICYEDISLELLISNVPTEIKLEYLKKVFKDMDYNDVCENIALLKAY
FNAQGSIQKAADNLYIHKNTLQYRISKLKEITGLDVRKPTESPALYLAYIITDELINEKYDLPLLLHNTK

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=390, Percent_Identity=27.6923076923077, Blast_Score=134, Evalue=8e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 44758; Mature: 44758

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHISKNSATQIVEEISKLVKQNINLMDETGHIIASRDKSRIGDFHYGAYKIISENLEEYY
CCCCCCHHHHHHHHHHHHHHHCCCEECCCCCEEECCCHHHCCCCCCHHHHHHHHHHHHHC
IDEDDLSKGIKKGINLPLELDGGIVGVIGMTGGYEEVITSGKLLKKMTEILLMESRANYR
CCHHHHHHHHHHHCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
QLMNKRVRNAFYEEWLINGGYKNADLEDRGMALGIDINKPRRVFIASIDELDNLKDSQQG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEEHHHHHCCCCHHHH
QSQIAKFENDVDAFLKRNNYKMHFRNASRQIIIIDNMDTENVVKFAGELAGYVWEKDKFE
HHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEE
LNIGIDSAQSYDMHEAYVEAHRAWTAAAEKHEQIICYEDISLELLISNVPTEIKLEYLKK
EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCHHHHHHHHH
VFKDMDYNDVCENIALLKAYFNAQGSIQKAADNLYIHKNTLQYRISKLKEITGLDVRKPT
HHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCEEEEHHHHHHHHHHHHHHCCCCCCCCC
ESPALYLAYIITDELINEKYDLPLLLHNTK
CCCCEEEHHHHHHHHHCCCCCCCEEEECCC
>Mature Secondary Structure
MHISKNSATQIVEEISKLVKQNINLMDETGHIIASRDKSRIGDFHYGAYKIISENLEEYY
CCCCCCHHHHHHHHHHHHHHHCCCEECCCCCEEECCCHHHCCCCCCHHHHHHHHHHHHHC
IDEDDLSKGIKKGINLPLELDGGIVGVIGMTGGYEEVITSGKLLKKMTEILLMESRANYR
CCHHHHHHHHHHHCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
QLMNKRVRNAFYEEWLINGGYKNADLEDRGMALGIDINKPRRVFIASIDELDNLKDSQQG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEEHHHHHCCCCHHHH
QSQIAKFENDVDAFLKRNNYKMHFRNASRQIIIIDNMDTENVVKFAGELAGYVWEKDKFE
HHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEE
LNIGIDSAQSYDMHEAYVEAHRAWTAAAEKHEQIICYEDISLELLISNVPTEIKLEYLKK
EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCHHHHHHHHH
VFKDMDYNDVCENIALLKAYFNAQGSIQKAADNLYIHKNTLQYRISKLKEITGLDVRKPT
HHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCEEEEHHHHHHHHHHHHHHCCCCCCCCC
ESPALYLAYIITDELINEKYDLPLLLHNTK
CCCCEEEHHHHHHHHHCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]