Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 238917083

GI number: 238917083

Start: 1165539

End: 1166231

Strand: Reverse

Name: yggS [C]

Synonym: EUBELI_01153

Alternate gene names: 238917083

Gene position: 1166231-1165539 (Counterclockwise)

Preceding gene: 238917084

Following gene: 238917082

Centisome position: 54.39

GC content: 37.52

Gene sequence:

>693_bases
ATGTTAAAGGATAATCTTATTGAAGTAGAAGAGCATATTAAGAAAGCATGTGAGAAATCAGGAAGAAATCCAGAAGATGT
GTGTCTTGTTGCAGTAAGCAAGACTAAGCCCAAGGAGATGCTTATGGAAGTATATGACTGTGGAATAAGACAGTTTGGAG
AGAATTATGTTCAGGAGATGGTGGACAAGACAGATACACTTCCTAAGGATATAACATGGCATATGATAGGACATCTGCAG
AGAAACAAGGTAAAATATGTTGTAGGACGAGCTGCATTGATTCATTCAGTTGATTCAGAAAGACTTGCTGTTGCAATAAG
TGATGATGCAGTAAAGAAAGGCCTTGTACAGGATATTCTTATTGAAGTAAATGTTGCAGGAGAAGAGAACAAGTTCGGTG
TAACATGTGATGAAGCGGAAGAATTTGTAAAGAAAATAGCAGTGCTTCCGGGAATCAGGATAAGAGGATTCATGACAAGT
GCACCATTCGTTGAAAATCCAGAAGATAACAGAAAGTATTTTAGAGAATTAAAGCAATTACTGGTTGACATAAATAACAA
AAACATAGATAATGTATACATGAATGTTTTGTCCATGGGCATGACTAACGACTATACAGTTGCGGTGGAAGAAGGAGCAA
CTCATGTCAGAGTGGGAACAGCAATATTTGGAGCCAGGGACTATTCACATTAA

Upstream 100 bases:

>100_bases
ATATATGACAGAATAATTCTAGATGCAGACAAGTATTCAGAGAATGAGATGATATATTAAATGCTTATGTATATCAGATT
AATTACATTCAGGAGGCATT

Downstream 100 bases:

>100_bases
TATGTTTTGGGGATACTAAAGAAAGTCAGATTATCAGATATAGGAGAGTGTTTATAATGGGAATGTTAGATGGTTTAACT
AATATGTTTAAGATGCATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MLKDNLIEVEEHIKKACEKSGRNPEDVCLVAVSKTKPKEMLMEVYDCGIRQFGENYVQEMVDKTDTLPKDITWHMIGHLQ
RNKVKYVVGRAALIHSVDSERLAVAISDDAVKKGLVQDILIEVNVAGEENKFGVTCDEAEEFVKKIAVLPGIRIRGFMTS
APFVENPEDNRKYFRELKQLLVDINNKNIDNVYMNVLSMGMTNDYTVAVEEGATHVRVGTAIFGARDYSH

Sequences:

>Translated_230_residues
MLKDNLIEVEEHIKKACEKSGRNPEDVCLVAVSKTKPKEMLMEVYDCGIRQFGENYVQEMVDKTDTLPKDITWHMIGHLQ
RNKVKYVVGRAALIHSVDSERLAVAISDDAVKKGLVQDILIEVNVAGEENKFGVTCDEAEEFVKKIAVLPGIRIRGFMTS
APFVENPEDNRKYFRELKQLLVDINNKNIDNVYMNVLSMGMTNDYTVAVEEGATHVRVGTAIFGARDYSH
>Mature_230_residues
MLKDNLIEVEEHIKKACEKSGRNPEDVCLVAVSKTKPKEMLMEVYDCGIRQFGENYVQEMVDKTDTLPKDITWHMIGHLQ
RNKVKYVVGRAALIHSVDSERLAVAISDDAVKKGLVQDILIEVNVAGEENKFGVTCDEAEEFVKKIAVLPGIRIRGFMTS
APFVENPEDNRKYFRELKQLLVDINNKNIDNVYMNVLSMGMTNDYTVAVEEGATHVRVGTAIFGARDYSH

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=243, Percent_Identity=37.037037037037, Blast_Score=137, Evalue=1e-32,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=38.3620689655172, Blast_Score=166, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI17533025, Length=217, Percent_Identity=37.7880184331797, Blast_Score=128, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6319435, Length=215, Percent_Identity=35.8139534883721, Blast_Score=108, Evalue=9e-25,
Organism=Drosophila melanogaster, GI45550861, Length=214, Percent_Identity=37.3831775700935, Blast_Score=124, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25964; Mature: 25964

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKDNLIEVEEHIKKACEKSGRNPEDVCLVAVSKTKPKEMLMEVYDCGIRQFGENYVQEM
CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
VDKTDTLPKDITWHMIGHLQRNKVKYVVGRAALIHSVDSERLAVAISDDAVKKGLVQDIL
HHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHH
IEVNVAGEENKFGVTCDEAEEFVKKIAVLPGIRIRGFMTSAPFVENPEDNRKYFRELKQL
EEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
LVDINNKNIDNVYMNVLSMGMTNDYTVAVEEGATHVRVGTAIFGARDYSH
HHHCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEHHHHCCCCCCCC
>Mature Secondary Structure
MLKDNLIEVEEHIKKACEKSGRNPEDVCLVAVSKTKPKEMLMEVYDCGIRQFGENYVQEM
CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
VDKTDTLPKDITWHMIGHLQRNKVKYVVGRAALIHSVDSERLAVAISDDAVKKGLVQDIL
HHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHH
IEVNVAGEENKFGVTCDEAEEFVKKIAVLPGIRIRGFMTSAPFVENPEDNRKYFRELKQL
EEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
LVDINNKNIDNVYMNVLSMGMTNDYTVAVEEGATHVRVGTAIFGARDYSH
HHHCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]