Click here to switch to the map view.

The map label for this gene is deoB [H]

Identifier: 238917043

GI number: 238917043

Start: 1122875

End: 1124050

Strand: Reverse

Name: deoB [H]

Synonym: EUBELI_01113

Alternate gene names: 238917043

Gene position: 1124050-1122875 (Counterclockwise)

Preceding gene: 238917045

Following gene: 238917042

Centisome position: 52.42

GC content: 39.29

Gene sequence:

>1176_bases
ATGAATATTAACAGAATTATATGGATAGTTTTAGATAGTGTTGGAATTGGTGAGGCCAGGGATGCAGCTAAGTTTGGAGA
TGAAGGTGCAGATACATTGGGACATACTGCAGAGGCTAATGGAGGTCTTAATATTCCTAATATGGTAAAGCTTGGAATAG
GCAATATAGACGGTGCACATAACCTTGAGCGTTGTGATAATCCCATCGGGTGTTTTGGAAAAATGGCAGAAGTGTCTGCA
GGAAAAGACACGACAATTGGACACTGGGAGATGGCAGGAATATATTCTCCTGATCCGTTTCCTGTGTATCCTGATGGATT
TCCAGATTGTATTATTGATGAATTTATTAAAAAGACAGGAATTCCAGGAATACTTTGCAATAAGCCGGCTTCAGGAACAC
AGATAATTGCTCAACTTGGTGATGAACATGTTGCGACAGGAAAACCAATTGTATATACATCAGGAGATTCAGTTTTCCAG
ATTGCATGTCATGAAGATGTTGTGCCGGTAGAAAGACTTTATGAAATGTGTGAGACAGCAAGACATATCCTTACAGGAAA
GAATGCTGTGGCAAGAGTTATTGCACGACCTTTTGTCGGGGAGAATGGCAATTATAAGAGAACACCTAACAGAAGGGATT
TCTCACTAAAGCCAAGTGAGGATAATATATTGTGCAGAGTCTGTGATAAAGGGCTTGATGTAATCGGAGTCGGTAAGATT
CATGATATTTTTGCTGGAGTTGGACTTACAGAGTCTAAGCACACTAATGATAATCAGGATGGAATGGATGTAACACTTGA
TTACATGAAGCAGGATAATAAAGGAATTATATATACTAATCTGGTTGAGTTTGATTCAACATGGGGACATAGAAGAGATT
ATAAAGGGTATGCCAGAGGTCTTGAAGAATTTGATGTGAGACTGTCACAGGTGTTAGACACTATGAAAGATACAGATATG
CTTGTTATTACGGCTGACCATGGTTGTGACCCAACCTATAAGGGAACTGACCATACAAGGGAATATGTTCCACTGCTTGT
ATATGGCAAATGTTTAAAACGTGGCGTTAATCTTGGAACAGGTGACACTTATGCTGATATAGCACAGACACTGGCTGAGA
TTTTTGGCACAGAACCGGTTAAGATAGGAAAGAGTTTTCTTAATAAGATTATGTAG

Upstream 100 bases:

>100_bases
GTATATGTGATTATAACATTTGTTTTCAAAAATGCAAAATAATAATACAGAAAGTATTCTTTGTGGTACAATATATTAAA
GATTGTCGGGAGGCGTGGCT

Downstream 100 bases:

>100_bases
GAGGTCTGCATTATGAGAATGGTTGATATTATAGAGAAGAAAAGAGATGGTGGAAAGCTTACTAAAGAAGAGATAGAGTT
CTTTGTTAATGGCTATGTCA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MNINRIIWIVLDSVGIGEARDAAKFGDEGADTLGHTAEANGGLNIPNMVKLGIGNIDGAHNLERCDNPIGCFGKMAEVSA
GKDTTIGHWEMAGIYSPDPFPVYPDGFPDCIIDEFIKKTGIPGILCNKPASGTQIIAQLGDEHVATGKPIVYTSGDSVFQ
IACHEDVVPVERLYEMCETARHILTGKNAVARVIARPFVGENGNYKRTPNRRDFSLKPSEDNILCRVCDKGLDVIGVGKI
HDIFAGVGLTESKHTNDNQDGMDVTLDYMKQDNKGIIYTNLVEFDSTWGHRRDYKGYARGLEEFDVRLSQVLDTMKDTDM
LVITADHGCDPTYKGTDHTREYVPLLVYGKCLKRGVNLGTGDTYADIAQTLAEIFGTEPVKIGKSFLNKIM

Sequences:

>Translated_391_residues
MNINRIIWIVLDSVGIGEARDAAKFGDEGADTLGHTAEANGGLNIPNMVKLGIGNIDGAHNLERCDNPIGCFGKMAEVSA
GKDTTIGHWEMAGIYSPDPFPVYPDGFPDCIIDEFIKKTGIPGILCNKPASGTQIIAQLGDEHVATGKPIVYTSGDSVFQ
IACHEDVVPVERLYEMCETARHILTGKNAVARVIARPFVGENGNYKRTPNRRDFSLKPSEDNILCRVCDKGLDVIGVGKI
HDIFAGVGLTESKHTNDNQDGMDVTLDYMKQDNKGIIYTNLVEFDSTWGHRRDYKGYARGLEEFDVRLSQVLDTMKDTDM
LVITADHGCDPTYKGTDHTREYVPLLVYGKCLKRGVNLGTGDTYADIAQTLAEIFGTEPVKIGKSFLNKIM
>Mature_391_residues
MNINRIIWIVLDSVGIGEARDAAKFGDEGADTLGHTAEANGGLNIPNMVKLGIGNIDGAHNLERCDNPIGCFGKMAEVSA
GKDTTIGHWEMAGIYSPDPFPVYPDGFPDCIIDEFIKKTGIPGILCNKPASGTQIIAQLGDEHVATGKPIVYTSGDSVFQ
IACHEDVVPVERLYEMCETARHILTGKNAVARVIARPFVGENGNYKRTPNRRDFSLKPSEDNILCRVCDKGLDVIGVGKI
HDIFAGVGLTESKHTNDNQDGMDVTLDYMKQDNKGIIYTNLVEFDSTWGHRRDYKGYARGLEEFDVRLSQVLDTMKDTDM
LVITADHGCDPTYKGTDHTREYVPLLVYGKCLKRGVNLGTGDTYADIAQTLAEIFGTEPVKIGKSFLNKIM

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=412, Percent_Identity=46.1165048543689, Blast_Score=349, Evalue=1e-97,
Organism=Escherichia coli, GI1789781, Length=409, Percent_Identity=26.8948655256724, Blast_Score=112, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 42837; Mature: 42837

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNINRIIWIVLDSVGIGEARDAAKFGDEGADTLGHTAEANGGLNIPNMVKLGIGNIDGAH
CCCCEEEEEEEECCCCCCCHHHHHCCCCCHHHHCCCCCCCCCCCCCCEEEECCCCCCCCC
NLERCDNPIGCFGKMAEVSAGKDTTIGHWEMAGIYSPDPFPVYPDGFPDCIIDEFIKKTG
CHHHCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCC
IPGILCNKPASGTQIIAQLGDEHVATGKPIVYTSGDSVFQIACHEDVVPVERLYEMCETA
CCCEEECCCCCHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHH
RHILTGKNAVARVIARPFVGENGNYKRTPNRRDFSLKPSEDNILCRVCDKGLDVIGVGKI
HHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCHH
HDIFAGVGLTESKHTNDNQDGMDVTLDYMKQDNKGIIYTNLVEFDSTWGHRRDYKGYARG
HHHHHCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHCC
LEEFDVRLSQVLDTMKDTDMLVITADHGCDPTYKGTDHTREYVPLLVYGKCLKRGVNLGT
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
GDTYADIAQTLAEIFGTEPVKIGKSFLNKIM
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MNINRIIWIVLDSVGIGEARDAAKFGDEGADTLGHTAEANGGLNIPNMVKLGIGNIDGAH
CCCCEEEEEEEECCCCCCCHHHHHCCCCCHHHHCCCCCCCCCCCCCCEEEECCCCCCCCC
NLERCDNPIGCFGKMAEVSAGKDTTIGHWEMAGIYSPDPFPVYPDGFPDCIIDEFIKKTG
CHHHCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCC
IPGILCNKPASGTQIIAQLGDEHVATGKPIVYTSGDSVFQIACHEDVVPVERLYEMCETA
CCCEEECCCCCHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHH
RHILTGKNAVARVIARPFVGENGNYKRTPNRRDFSLKPSEDNILCRVCDKGLDVIGVGKI
HHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCHH
HDIFAGVGLTESKHTNDNQDGMDVTLDYMKQDNKGIIYTNLVEFDSTWGHRRDYKGYARG
HHHHHCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHCC
LEEFDVRLSQVLDTMKDTDMLVITADHGCDPTYKGTDHTREYVPLLVYGKCLKRGVNLGT
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
GDTYADIAQTLAEIFGTEPVKIGKSFLNKIM
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA