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The map label for this gene is radC [C]

Identifier: 238916926

GI number: 238916926

Start: 1013600

End: 1014292

Strand: Direct

Name: radC [C]

Synonym: EUBELI_00995

Alternate gene names: 238916926

Gene position: 1013600-1014292 (Clockwise)

Preceding gene: 238916925

Following gene: 238916927

Centisome position: 47.27

GC content: 37.52

Gene sequence:

>693_bases
ATGGTATATGAGAATATAATAACAGGTGTAAAGGAAGAAAAGCTGCTTCCTTATGAAAAATGTCTCCAGCATGGTGCGAT
GTCGCTTGATAATGCAGAACTTCTAGCAGCAATTATAAGAACAGGAACTAATGGTTTAAGTTCTATCCAGCTTGCAGAGA
AGTTACTGGAGAGCGCAGGTAATCTTAAGGGGCTTTATGATATGTCCGTTTCAGAACTTATGCAGATTAAAGGTATAGGA
AAAGCGAAAGCTGTACAGATATGCTGCATTCTTGAACTTTCAAGAAGAATTGCCAAGCAGAAGGCTAGAGAAAGACTGGA
TTTTTCTAATGCGGAAACTATTGCCGGATACTATATGGAAGATATGAGACATTTAGAAAAAGAACATCTGGTTCTTGTAA
TGCTTGACAACAGATGTCGTCTTATAAGGGATAAGGTGTTATCTGTTGGAACATCAACAGGTTCAATGGTTTCAGTAAGG
GAAATATTTAAGGAGGCACTGGATAACAGGGCTGCTTCTGTTGTACTTCTTCATAACCATCCATCGGGAAACCCGTCTCC
AAGCAGAGAGGATATGAAGGTGACAAGAAGTGTTATGGAAGCTGGAAAGATTATTGGAATTGAACTGTTAGATCATATTG
TTATAGGAGATAATTCTTATTTCAGTTTTAAACAAATGCAATACATCAATTAA

Upstream 100 bases:

>100_bases
ACATTTGCACTCCAGATTAAGATTACAATTGCCAGTATAATAGGAGTTATACTTGCAATTGTTATTTACAGATTTATTTA
ATCTGACTGCTGTTTAATTT

Downstream 100 bases:

>100_bases
CGATGAAGAAAGGAATTAAGACATGGGTAACGCATACGGTATTGATATAGGCACAAGTAATTTCAAAATGTGCTGTAGTG
ACAAAGATAAGATACTTAAC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MVYENIITGVKEEKLLPYEKCLQHGAMSLDNAELLAAIIRTGTNGLSSIQLAEKLLESAGNLKGLYDMSVSELMQIKGIG
KAKAVQICCILELSRRIAKQKARERLDFSNAETIAGYYMEDMRHLEKEHLVLVMLDNRCRLIRDKVLSVGTSTGSMVSVR
EIFKEALDNRAASVVLLHNHPSGNPSPSREDMKVTRSVMEAGKIIGIELLDHIVIGDNSYFSFKQMQYIN

Sequences:

>Translated_230_residues
MVYENIITGVKEEKLLPYEKCLQHGAMSLDNAELLAAIIRTGTNGLSSIQLAEKLLESAGNLKGLYDMSVSELMQIKGIG
KAKAVQICCILELSRRIAKQKARERLDFSNAETIAGYYMEDMRHLEKEHLVLVMLDNRCRLIRDKVLSVGTSTGSMVSVR
EIFKEALDNRAASVVLLHNHPSGNPSPSREDMKVTRSVMEAGKIIGIELLDHIVIGDNSYFSFKQMQYIN
>Mature_230_residues
MVYENIITGVKEEKLLPYEKCLQHGAMSLDNAELLAAIIRTGTNGLSSIQLAEKLLESAGNLKGLYDMSVSELMQIKGIG
KAKAVQICCILELSRRIAKQKARERLDFSNAETIAGYYMEDMRHLEKEHLVLVMLDNRCRLIRDKVLSVGTSTGSMVSVR
EIFKEALDNRAASVVLLHNHPSGNPSPSREDMKVTRSVMEAGKIIGIELLDHIVIGDNSYFSFKQMQYIN

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=215, Percent_Identity=35.3488372093023, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1788312, Length=118, Percent_Identity=35.5932203389831, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI2367100, Length=118, Percent_Identity=33.0508474576271, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788997, Length=118, Percent_Identity=31.3559322033898, Blast_Score=81, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25701; Mature: 25701

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYENIITGVKEEKLLPYEKCLQHGAMSLDNAELLAAIIRTGTNGLSSIQLAEKLLESAG
CCHHHHHCCCCHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
NLKGLYDMSVSELMQIKGIGKAKAVQICCILELSRRIAKQKARERLDFSNAETIAGYYME
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DMRHLEKEHLVLVMLDNRCRLIRDKVLSVGTSTGSMVSVREIFKEALDNRAASVVLLHNH
HHHHHHHHCEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEECC
PSGNPSPSREDMKVTRSVMEAGKIIGIELLDHIVIGDNSYFSFKQMQYIN
CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHEEECCCCCCCHHHHHCCC
>Mature Secondary Structure
MVYENIITGVKEEKLLPYEKCLQHGAMSLDNAELLAAIIRTGTNGLSSIQLAEKLLESAG
CCHHHHHCCCCHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
NLKGLYDMSVSELMQIKGIGKAKAVQICCILELSRRIAKQKARERLDFSNAETIAGYYME
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DMRHLEKEHLVLVMLDNRCRLIRDKVLSVGTSTGSMVSVREIFKEALDNRAASVVLLHNH
HHHHHHHHCEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEECC
PSGNPSPSREDMKVTRSVMEAGKIIGIELLDHIVIGDNSYFSFKQMQYIN
CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHEEECCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA