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The map label for this gene is rnfD [H]

Identifier: 238916866

GI number: 238916866

Start: 950633

End: 951547

Strand: Direct

Name: rnfD [H]

Synonym: EUBELI_00935

Alternate gene names: 238916866

Gene position: 950633-951547 (Clockwise)

Preceding gene: 238916865

Following gene: 238916867

Centisome position: 44.34

GC content: 38.69

Gene sequence:

>915_bases
ATGAGAGATGTTCTTATTGCTTTAACTCCTGCCAGCATATTTGGTATAGTTAATTTTGGCCTCGATGCACTGCTTCGTAT
AGTAATCGGTATTGTTACTTGTGTAGCATGTGAGGCATTATATCAGTATTTCATGCATAAGAAAGTTACTGTTACAGATT
TAAGTGCAGCAGTAACAGGTCTTCTTATTGCATTAAATATTCCATCAACATTAAATGTTGGTTTTGAAATCGTAGGATGT
GTATTTGCAATTATCGTAGTTAAGCAGCTTTTTGGAGGACTTGGACAGAACTTCATGAACCCTGCTCTTGCAGCAAGATG
TTTCCTTCTTATTGCATATACAGGTCCGATGACTAATTTCGTTACATCTAACGGATTTTTAGACGCATATTCAGGAGCAA
CACCTCTTGCGCTCCTTAAGCCTGGTGCAGAATCAACAGGCGTTGTTTCATTAGCTAAGATGTTTATTGGTACAACAGGT
GGTGTTATCGGTGAGACTTCAGCAATCTGCCTTCTTTTAGGTGGTATCTACCTCCTTGCAAGAAAGGTTATTAACTGGAG
AATACCTGTAACATATGTAGGTGTATTTGCAGTGCTTATATTCCTTTTTGCACCAGGACATCATTTCGATGTAATCTACA
TGCTTGAGGAAGTATGTGGTGGTGGACTTTTACTTGGTGCCATCTTCATGGCGACAGATTATGTAACTTCACCAATTACA
CCTAATGGTAAAATTGTATTTGGCTGCTGCTTAGGTCTTCTTACATTCATTTTCAGAATGTATGGTGGTTCAGCAGAAGG
CGTTTCATATGCAATTATCTTCTGTAACCTCTTAGTTCCTCTTATTGAGAGAGTAACAGTTCCTAAGTCATTTGGTAAGA
AGAAGCCAGAGAAGAAAGCAAAGGAGGCTGCATAA

Upstream 100 bases:

>100_bases
ACAGAAGAAAGAAGTAGAAAGGTGGGCAATCAAAGTGAGTGAGATTTTTAACGTATCGACTAATCCTCATGTGCGAAGCG
GGAATACTACTCAGACAATA

Downstream 100 bases:

>100_bases
GATGAAGAAAATAGTTAAAGATGCATTAGTTTTATTTGCTATAACACTTGTAGCCGGAATTCTTCTTGGTGTTGTATATC
AGATAACACTTGATCCTATT

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MRDVLIALTPASIFGIVNFGLDALLRIVIGIVTCVACEALYQYFMHKKVTVTDLSAAVTGLLIALNIPSTLNVGFEIVGC
VFAIIVVKQLFGGLGQNFMNPALAARCFLLIAYTGPMTNFVTSNGFLDAYSGATPLALLKPGAESTGVVSLAKMFIGTTG
GVIGETSAICLLLGGIYLLARKVINWRIPVTYVGVFAVLIFLFAPGHHFDVIYMLEEVCGGGLLLGAIFMATDYVTSPIT
PNGKIVFGCCLGLLTFIFRMYGGSAEGVSYAIIFCNLLVPLIERVTVPKSFGKKKPEKKAKEAA

Sequences:

>Translated_304_residues
MRDVLIALTPASIFGIVNFGLDALLRIVIGIVTCVACEALYQYFMHKKVTVTDLSAAVTGLLIALNIPSTLNVGFEIVGC
VFAIIVVKQLFGGLGQNFMNPALAARCFLLIAYTGPMTNFVTSNGFLDAYSGATPLALLKPGAESTGVVSLAKMFIGTTG
GVIGETSAICLLLGGIYLLARKVINWRIPVTYVGVFAVLIFLFAPGHHFDVIYMLEEVCGGGLLLGAIFMATDYVTSPIT
PNGKIVFGCCLGLLTFIFRMYGGSAEGVSYAIIFCNLLVPLIERVTVPKSFGKKKPEKKAKEAA
>Mature_304_residues
MRDVLIALTPASIFGIVNFGLDALLRIVIGIVTCVACEALYQYFMHKKVTVTDLSAAVTGLLIALNIPSTLNVGFEIVGC
VFAIIVVKQLFGGLGQNFMNPALAARCFLLIAYTGPMTNFVTSNGFLDAYSGATPLALLKPGAESTGVVSLAKMFIGTTG
GVIGETSAICLLLGGIYLLARKVINWRIPVTYVGVFAVLIFLFAPGHHFDVIYMLEEVCGGGLLLGAIFMATDYVTSPIT
PNGKIVFGCCLGLLTFIFRMYGGSAEGVSYAIIFCNLLVPLIERVTVPKSFGKKKPEKKAKEAA

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=332, Percent_Identity=31.9277108433735, Blast_Score=152, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 32314; Mature: 32314

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDVLIALTPASIFGIVNFGLDALLRIVIGIVTCVACEALYQYFMHKKVTVTDLSAAVTG
CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHH
LLIALNIPSTLNVGFEIVGCVFAIIVVKQLFGGLGQNFMNPALAARCFLLIAYTGPMTNF
HHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHCCCCHHHH
VTSNGFLDAYSGATPLALLKPGAESTGVVSLAKMFIGTTGGVIGETSAICLLLGGIYLLA
HCCCCCEECCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
RKVINWRIPVTYVGVFAVLIFLFAPGHHFDVIYMLEEVCGGGLLLGAIFMATDYVTSPIT
HHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
PNGKIVFGCCLGLLTFIFRMYGGSAEGVSYAIIFCNLLVPLIERVTVPKSFGKKKPEKKA
CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHH
KEAA
HCCC
>Mature Secondary Structure
MRDVLIALTPASIFGIVNFGLDALLRIVIGIVTCVACEALYQYFMHKKVTVTDLSAAVTG
CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHH
LLIALNIPSTLNVGFEIVGCVFAIIVVKQLFGGLGQNFMNPALAARCFLLIAYTGPMTNF
HHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHCCCCHHHH
VTSNGFLDAYSGATPLALLKPGAESTGVVSLAKMFIGTTGGVIGETSAICLLLGGIYLLA
HCCCCCEECCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
RKVINWRIPVTYVGVFAVLIFLFAPGHHFDVIYMLEEVCGGGLLLGAIFMATDYVTSPIT
HHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
PNGKIVFGCCLGLLTFIFRMYGGSAEGVSYAIIFCNLLVPLIERVTVPKSFGKKKPEKKA
CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHH
KEAA
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA