Click here to switch to the map view.

The map label for this gene is rnfC [H]

Identifier: 238916865

GI number: 238916865

Start: 949230

End: 950549

Strand: Direct

Name: rnfC [H]

Synonym: EUBELI_00934

Alternate gene names: 238916865

Gene position: 949230-950549 (Clockwise)

Preceding gene: 238916863

Following gene: 238916866

Centisome position: 44.27

GC content: 41.74

Gene sequence:

>1320_bases
ATGGGAAAGTGTACATTTAAAGGTGGATGTCATCCTTATGACGGTAAAGAGTTTTCTAAGGATAAACCAATCAAAGAACT
CTTTCCAGCCGTAGGAGAGATGGTGTTCCCGCTTTCACAGCACATCGGCGCACCTGCTAAGCCAGTTGTTGCCAAGGGCG
ACTATGTCCTTGCAGGCCAGCTGATAGCCGAGGCAGGTGGATTTGTTTCTGCGAACATTCATTCATCTGTATCAGGTACT
GTTAAAGCTATTGAGCCAAGAACATTGGCTACAGGCGGTAAGTGCAATTCTATCATTATCGAGAATGATGGCGAATTCAA
AGAAGTTGAATATACACCTATGAAGTTCGAGGATCTTACTAAGGACGTTATCTTAGAAAGAATCAAGGCTGCTGGTGTTG
TAGGTATGGGAGGAGCTGGTTTCCCAACTAATGTTAAGCTCTCTCCAAAGAATCCTGAAGCCATAGATTACATTATCGTT
AATGGAGCAGAGTGTGAGCCTTACCTTACATCTGATTACAGAAGATTATTAGAAGAATCAGACAAGGTTGTTATGGGTCT
TAAGATTGCTCTTAAGATATTTGACCATGCTAAGGGAATTATCGGTATTGAAGATAATAAGCCTGAGGCAATAAGAATCA
TGCAGGAAGCTACAGCTTCTGAGCCTGATATTGAAGTTAAGCCATTAAAGACTAAGTATCCACAGGGAGGAGAGCGTAGT
CTTATATATGCAACAACAGGAAGAGCTATTAATTCAAGTATGCTTCCAGCTGATGCAGGCTGTATCGTACATAATGTTGA
TACAATATTCTCAATCTATCTTTCAGTTATAGAAGGTAAGCCTCTTACTAAGAGAATATGTACTGTAACAGGCGACGGAG
TTAAAGAGCCTGGCAACTTCTATGTATGGTTAGGAACTAATTACAGACAGCTTCTTGACGCTGCCGGTGGTCCTGTAGGA
GAACCTGAGAAATATATTTCCGGTGGTCCTATGATGGGATTTGCCATGTACAGTCTTGACGTACCTGTTGTTAAGGGAAG
TTCATCACTTCTTGTATTCCAGAAGGATATCGTATCTAAGACCACATCTTCTGCATGTATAAGATGTGGTAAATGTGGTG
AGGCATGTCCGGAACACCTTCTTCCAGCAAAGCTTGCCGGTTTTGCATCACGTAATGATGAAGAAGGCTTTACTAAGTTC
GATGGTATGGAATGTGTAATGTGCGGAAGCTGTTCATATGTCTGTCCAGCCAAGAGACCATTAACACAGCAGATTAAGGC
TATGAGAAGTACAGTACTTGCTAACAGAAGAAAGAAGTAG

Upstream 100 bases:

>100_bases
CTCTTATTATATAGGAATATATACACAAAAAAAAGTAGATTTTTGCTATTTATTGAGATAAAATACTATTTAATAAAAAC
TTTATAAGGAGAAATATGTC

Downstream 100 bases:

>100_bases
AAAGGTGGGCAATCAAAGTGAGTGAGATTTTTAACGTATCGACTAATCCTCATGTGCGAAGCGGGAATACTACTCAGACA
ATAATGAGAGATGTTCTTAT

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MGKCTFKGGCHPYDGKEFSKDKPIKELFPAVGEMVFPLSQHIGAPAKPVVAKGDYVLAGQLIAEAGGFVSANIHSSVSGT
VKAIEPRTLATGGKCNSIIIENDGEFKEVEYTPMKFEDLTKDVILERIKAAGVVGMGGAGFPTNVKLSPKNPEAIDYIIV
NGAECEPYLTSDYRRLLEESDKVVMGLKIALKIFDHAKGIIGIEDNKPEAIRIMQEATASEPDIEVKPLKTKYPQGGERS
LIYATTGRAINSSMLPADAGCIVHNVDTIFSIYLSVIEGKPLTKRICTVTGDGVKEPGNFYVWLGTNYRQLLDAAGGPVG
EPEKYISGGPMMGFAMYSLDVPVVKGSSSLLVFQKDIVSKTTSSACIRCGKCGEACPEHLLPAKLAGFASRNDEEGFTKF
DGMECVMCGSCSYVCPAKRPLTQQIKAMRSTVLANRRKK

Sequences:

>Translated_439_residues
MGKCTFKGGCHPYDGKEFSKDKPIKELFPAVGEMVFPLSQHIGAPAKPVVAKGDYVLAGQLIAEAGGFVSANIHSSVSGT
VKAIEPRTLATGGKCNSIIIENDGEFKEVEYTPMKFEDLTKDVILERIKAAGVVGMGGAGFPTNVKLSPKNPEAIDYIIV
NGAECEPYLTSDYRRLLEESDKVVMGLKIALKIFDHAKGIIGIEDNKPEAIRIMQEATASEPDIEVKPLKTKYPQGGERS
LIYATTGRAINSSMLPADAGCIVHNVDTIFSIYLSVIEGKPLTKRICTVTGDGVKEPGNFYVWLGTNYRQLLDAAGGPVG
EPEKYISGGPMMGFAMYSLDVPVVKGSSSLLVFQKDIVSKTTSSACIRCGKCGEACPEHLLPAKLAGFASRNDEEGFTKF
DGMECVMCGSCSYVCPAKRPLTQQIKAMRSTVLANRRKK
>Mature_438_residues
GKCTFKGGCHPYDGKEFSKDKPIKELFPAVGEMVFPLSQHIGAPAKPVVAKGDYVLAGQLIAEAGGFVSANIHSSVSGTV
KAIEPRTLATGGKCNSIIIENDGEFKEVEYTPMKFEDLTKDVILERIKAAGVVGMGGAGFPTNVKLSPKNPEAIDYIIVN
GAECEPYLTSDYRRLLEESDKVVMGLKIALKIFDHAKGIIGIEDNKPEAIRIMQEATASEPDIEVKPLKTKYPQGGERSL
IYATTGRAINSSMLPADAGCIVHNVDTIFSIYLSVIEGKPLTKRICTVTGDGVKEPGNFYVWLGTNYRQLLDAAGGPVGE
PEKYISGGPMMGFAMYSLDVPVVKGSSSLLVFQKDIVSKTTSSACIRCGKCGEACPEHLLPAKLAGFASRNDEEGFTKFD
GMECVMCGSCSYVCPAKRPLTQQIKAMRSTVLANRRKK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=438, Percent_Identity=37.2146118721461, Blast_Score=296, Evalue=2e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 47257; Mature: 47126

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKCTFKGGCHPYDGKEFSKDKPIKELFPAVGEMVFPLSQHIGAPAKPVVAKGDYVLAGQ
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEEHH
LIAEAGGFVSANIHSSVSGTVKAIEPRTLATGGKCNSIIIENDGEFKEVEYTPMKFEDLT
HHHHCCCEEEEECCCCCCCCEEEECCCEEECCCCCCEEEEECCCCEEEEEECCCCHHHHH
KDVILERIKAAGVVGMGGAGFPTNVKLSPKNPEAIDYIIVNGAECEPYLTSDYRRLLEES
HHHHHHHHHHCCEEECCCCCCCCCEEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCC
DKVVMGLKIALKIFDHAKGIIGIEDNKPEAIRIMQEATASEPDIEVKPLKTKYPQGGERS
CCEEEHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCE
LIYATTGRAINSSMLPADAGCIVHNVDTIFSIYLSVIEGKPLTKRICTVTGDGVKEPGNF
EEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCHHHHEEEEECCCCCCCCCE
YVWLGTNYRQLLDAAGGPVGEPEKYISGGPMMGFAMYSLDVPVVKGSSSLLVFQKDIVSK
EEEECCCHHHHHHHCCCCCCCCHHHHCCCCEEEEEEEEECCEEEECCCCEEEEEHHHHHH
TTSSACIRCGKCGEACPEHLLPAKLAGFASRNDEEGFTKFDGMECVMCGSCSYVCPAKRP
CCCHHHHCCCCCHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
LTQQIKAMRSTVLANRRKK
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GKCTFKGGCHPYDGKEFSKDKPIKELFPAVGEMVFPLSQHIGAPAKPVVAKGDYVLAGQ
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEEHH
LIAEAGGFVSANIHSSVSGTVKAIEPRTLATGGKCNSIIIENDGEFKEVEYTPMKFEDLT
HHHHCCCEEEEECCCCCCCCEEEECCCEEECCCCCCEEEEECCCCEEEEEECCCCHHHHH
KDVILERIKAAGVVGMGGAGFPTNVKLSPKNPEAIDYIIVNGAECEPYLTSDYRRLLEES
HHHHHHHHHHCCEEECCCCCCCCCEEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCC
DKVVMGLKIALKIFDHAKGIIGIEDNKPEAIRIMQEATASEPDIEVKPLKTKYPQGGERS
CCEEEHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCE
LIYATTGRAINSSMLPADAGCIVHNVDTIFSIYLSVIEGKPLTKRICTVTGDGVKEPGNF
EEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCHHHHEEEEECCCCCCCCCE
YVWLGTNYRQLLDAAGGPVGEPEKYISGGPMMGFAMYSLDVPVVKGSSSLLVFQKDIVSK
EEEECCCHHHHHHHCCCCCCCCHHHHCCCCEEEEEEEEECCEEEECCCCEEEEEHHHHHH
TTSSACIRCGKCGEACPEHLLPAKLAGFASRNDEEGFTKFDGMECVMCGSCSYVCPAKRP
CCCHHHHCCCCCHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
LTQQIKAMRSTVLANRRKK
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA