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The map label for this gene is fliR [H]

Identifier: 238916766

GI number: 238916766

Start: 841161

End: 841934

Strand: Direct

Name: fliR [H]

Synonym: EUBELI_00828

Alternate gene names: 238916766

Gene position: 841161-841934 (Clockwise)

Preceding gene: 238916765

Following gene: 238916767

Centisome position: 39.23

GC content: 32.82

Gene sequence:

>774_bases
ATGAATTTTACTTTTGCTTTAGCACAATTTGAACTATTTGTTTTGATATTAATAAGGCTGGCATCTTTTGTATTTGCTGC
GCCTTTTTTTAATATGGCAAATGTACCTAACAGGGTTAAGATTGGGTTTTCATTTTGCCTTACAATTATGGTATATTCGC
TATTTCCTGATATGTCAGTTGAATATAATGGAATGATTGAGTATGCAATTATTGTTGTTGAGGAAATTATAGTAGGAATT
CTTCTTGGTGCAGTATCATCATTCTGTGTCCAGATTATTATGTTTGCTGGTAAGATAATAGATATGGATATAGGTATTTC
AATGGCGCAGCTTTATGATCCGACAACCAGAATGCAGGTTGGAATTATGGGGAATTTTTATTATTACATGATGATGCTTC
TGCTTATTATTTCTGGAATGCATCAATATCTTGTTTCAGCTATAGTTGAGACATACAGAGTTATTCCTATTGGTGGAGTA
AAATTTGGAGCTGGTATTTATACTGGCATAATCGGGTTTGTGTCTGATTTTTTTGTTATTGGATTCAGAATAGCATTGCC
CGTTTTTGCTGCTATACTTATGCTTAACTGTGTCCTTGCTATTCTTGCAAAGGTTTCACCGCAGATGAATATGTTCGTTG
TTGGTATGCAGCTTAAGATTTTTGTTGGTATATTTGTTATTTTATTTACGATTTCAATGCTTCCATCAGTTTCTAATTTT
ATTTTGGATGAAATTGAAAAAATGTTTGCGATATTAGTAAGGGGTATGAGTTAG

Upstream 100 bases:

>100_bases
TATGCTTATGGGGAACTGGATTCTTAATGAAATAGTTTCTTTTATGCAGATGCTTTGGGGAAGTTTTGGTCAATATGTTT
GATGGCAGGTATAGGGTGTT

Downstream 100 bases:

>100_bases
TGCAGGATACATTACTTTATATGAATCTCCAGTTGTTTGCTAAAGACGGACCGGGCGGAGAAAAAACTGAGCCGGCAACC
AGTAAGAAGCTGGATGATGT

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MNFTFALAQFELFVLILIRLASFVFAAPFFNMANVPNRVKIGFSFCLTIMVYSLFPDMSVEYNGMIEYAIIVVEEIIVGI
LLGAVSSFCVQIIMFAGKIIDMDIGISMAQLYDPTTRMQVGIMGNFYYYMMMLLLIISGMHQYLVSAIVETYRVIPIGGV
KFGAGIYTGIIGFVSDFFVIGFRIALPVFAAILMLNCVLAILAKVSPQMNMFVVGMQLKIFVGIFVILFTISMLPSVSNF
ILDEIEKMFAILVRGMS

Sequences:

>Translated_257_residues
MNFTFALAQFELFVLILIRLASFVFAAPFFNMANVPNRVKIGFSFCLTIMVYSLFPDMSVEYNGMIEYAIIVVEEIIVGI
LLGAVSSFCVQIIMFAGKIIDMDIGISMAQLYDPTTRMQVGIMGNFYYYMMMLLLIISGMHQYLVSAIVETYRVIPIGGV
KFGAGIYTGIIGFVSDFFVIGFRIALPVFAAILMLNCVLAILAKVSPQMNMFVVGMQLKIFVGIFVILFTISMLPSVSNF
ILDEIEKMFAILVRGMS
>Mature_257_residues
MNFTFALAQFELFVLILIRLASFVFAAPFFNMANVPNRVKIGFSFCLTIMVYSLFPDMSVEYNGMIEYAIIVVEEIIVGI
LLGAVSSFCVQIIMFAGKIIDMDIGISMAQLYDPTTRMQVGIMGNFYYYMMMLLLIISGMHQYLVSAIVETYRVIPIGGV
KFGAGIYTGIIGFVSDFFVIGFRIALPVFAAILMLNCVLAILAKVSPQMNMFVVGMQLKIFVGIFVILFTISMLPSVSNF
ILDEIEKMFAILVRGMS

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=246, Percent_Identity=26.8292682926829, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28652; Mature: 28652

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
8.2 %Met     (Translated Protein)
9.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
8.2 %Met     (Mature Protein)
9.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]