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The map label for this gene is codY [H]

Identifier: 238916742

GI number: 238916742

Start: 822032

End: 822802

Strand: Direct

Name: codY [H]

Synonym: EUBELI_00804

Alternate gene names: 238916742

Gene position: 822032-822802 (Clockwise)

Preceding gene: 238916741

Following gene: 238916743

Centisome position: 38.34

GC content: 35.15

Gene sequence:

>771_bases
ATGAGTGTTCAGCTTCTTGATAAAACAAGAAAAATCAATAAGCTGCTCCACAATAATCATTCACACAGAGTTGATTTTAA
TGATATCTGTGATGTGCTTAGTGGAATATTAGAGTCTAATGTTCTGGTTATAAGTCAGAAAGGAAAGATTCTGGGAGCAG
GATACTGGAATAATATTGATAGAATAGGCGAACTTATAACAGCGGATGTGGGTGGATTCGTTGACAAGATGTTTAATGAA
AGACTGCTTGGAGTATTATCCACAAAGGAGAATGTTAATCTTCTTACACTGGGGTTTACCAGTGGCAGTGAAAGAAAATT
TAATGCAATTATTGCACCAGTTGAGATTGCCGGAGAACGGCTGGGAACATTATTTATGTATAAATGTATCAGTGATTATG
AAATTGATGATATTATTTTATGTGAATATGGAGCTACTGTTGTAGGACTTGAGATGATGAGTTCTGTATGCAATGAGAAT
GCAGAAGATGAAAGAAAAAAGAAAATTGTCAAGTCAGCGATTTCTACGCTTTCAGCCTCAGAACTTCAGGCAATAAAGGC
TGTTTTTGAAGCTCTTGATGGAACAGAAGGTATTCTTGTAGCAAGCAGGATTGCGGATAATACAGGAATAACAAGATCAG
TTATTGTTAATGCACTTAAAAAATTTGACAGTGCAGGTGTTATTTCTACGAAATCATCAGGCATGAAAGGAACAAAAATA
AAAGTCCTTAACGAAATTGTGTTTGATGAGATAAAAAAGCTTGATGATTAG

Upstream 100 bases:

>100_bases
AATTGTATGTGCTGATGAGACATGCGGCTATGTAGAGAATAAGAATGACAAGGAACAATAACCGGGTGGTTATTATCAGA
AGAAGGATGGGAGATTTACA

Downstream 100 bases:

>100_bases
GATGTAAAATTGTATAATTGATTCAGCTTAAAGAGTAGGTGTGAAGTGATAAAAGGATGGATCCAATTTATTTGGGTCCT
TTTTTGTCAAAATACTTGTA

Product: transcriptional repressor CodY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MSVQLLDKTRKINKLLHNNHSHRVDFNDICDVLSGILESNVLVISQKGKILGAGYWNNIDRIGELITADVGGFVDKMFNE
RLLGVLSTKENVNLLTLGFTSGSERKFNAIIAPVEIAGERLGTLFMYKCISDYEIDDIILCEYGATVVGLEMMSSVCNEN
AEDERKKKIVKSAISTLSASELQAIKAVFEALDGTEGILVASRIADNTGITRSVIVNALKKFDSAGVISTKSSGMKGTKI
KVLNEIVFDEIKKLDD

Sequences:

>Translated_256_residues
MSVQLLDKTRKINKLLHNNHSHRVDFNDICDVLSGILESNVLVISQKGKILGAGYWNNIDRIGELITADVGGFVDKMFNE
RLLGVLSTKENVNLLTLGFTSGSERKFNAIIAPVEIAGERLGTLFMYKCISDYEIDDIILCEYGATVVGLEMMSSVCNEN
AEDERKKKIVKSAISTLSASELQAIKAVFEALDGTEGILVASRIADNTGITRSVIVNALKKFDSAGVISTKSSGMKGTKI
KVLNEIVFDEIKKLDD
>Mature_255_residues
SVQLLDKTRKINKLLHNNHSHRVDFNDICDVLSGILESNVLVISQKGKILGAGYWNNIDRIGELITADVGGFVDKMFNER
LLGVLSTKENVNLLTLGFTSGSERKFNAIIAPVEIAGERLGTLFMYKCISDYEIDDIILCEYGATVVGLEMMSSVCNENA
EDERKKKIVKSAISTLSASELQAIKAVFEALDGTEGILVASRIADNTGITRSVIVNALKKFDSAGVISTKSSGMKGTKIK
VLNEIVFDEIKKLDD

Specific function: DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of

COG id: COG4465

COG function: function code K; Pleiotropic transcriptional repressor

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CodY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014154
- InterPro:   IPR010312
- InterPro:   IPR013198
- InterPro:   IPR011991 [H]

Pfam domain/function: PF06018 CodY; PF08222 HTH_CodY [H]

EC number: NA

Molecular weight: Translated: 27994; Mature: 27862

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVQLLDKTRKINKLLHNNHSHRVDFNDICDVLSGILESNVLVISQKGKILGAGYWNNID
CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCEEECCCCCCHH
RIGELITADVGGFVDKMFNERLLGVLSTKENVNLLTLGFTSGSERKFNAIIAPVEIAGER
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHEEEEHHHHHHHH
LGTLFMYKCISDYEIDDIILCEYGATVVGLEMMSSVCNENAEDERKKKIVKSAISTLSAS
HHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
ELQAIKAVFEALDGTEGILVASRIADNTGITRSVIVNALKKFDSAGVISTKSSGMKGTKI
HHHHHHHHHHHHCCCCCEEEHHHHHCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHH
KVLNEIVFDEIKKLDD
HHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVQLLDKTRKINKLLHNNHSHRVDFNDICDVLSGILESNVLVISQKGKILGAGYWNNID
CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCEEECCCCCCHH
RIGELITADVGGFVDKMFNERLLGVLSTKENVNLLTLGFTSGSERKFNAIIAPVEIAGER
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHEEEEHHHHHHHH
LGTLFMYKCISDYEIDDIILCEYGATVVGLEMMSSVCNENAEDERKKKIVKSAISTLSAS
HHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
ELQAIKAVFEALDGTEGILVASRIADNTGITRSVIVNALKKFDSAGVISTKSSGMKGTKI
HHHHHHHHHHHHCCCCCEEEHHHHHCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHH
KVLNEIVFDEIKKLDD
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA