Click here to switch to the map view.

The map label for this gene is yrrO [H]

Identifier: 238916718

GI number: 238916718

Start: 789313

End: 790578

Strand: Direct

Name: yrrO [H]

Synonym: EUBELI_00780

Alternate gene names: 238916718

Gene position: 789313-790578 (Clockwise)

Preceding gene: 238916717

Following gene: 238916719

Centisome position: 36.81

GC content: 39.02

Gene sequence:

>1266_bases
ATGGCAGGACATATGTATAATGGCAGGGAGACAGAACTTCTTATACCTGCAAGCAGTCTTGAAGTTTTAAAGATAGCAGT
AATATTCGGTGCTGATGCCGTATATATCGGTGGTGAAGCATTTGGATTAAGAGCTAAGGCTAAGAATTTTTCAATAGAAG
ATATGAAAGAGGGCGTTAAGTTTGCCCATGAAAGAAATGTCAAGGTATATGTTACAGCTAATATTCTGGCACATAACTAT
GACCTTGAGGGTGCAAGAGCTTACTTTGAGGAACTTAAGGAAGTAGGTCCTGACGCGCTTATTATATCGGACCCGGGAAT
GTTTACAATAGCAAAGGAAGTACTTCCGGATATTGATATACATATAAGCACACAGGCTAATAATACTAACTATATGACAT
ATAATTTCTGGTGGAATCAGGGTGCTAAGAGAGTGGTTTCAGCAAGAGAATTATCTCTTGAAGAGATTAAGGAGATAAGA
GAGCATATTCCTGATGAGATGGAGATTGAGACATTCATGCATGGAGCAATGTGTATATCTTATTCAGGCAGATGCCTGTT
ATCAAGTTTCCTTGCAGGAAGAGATGCTAACAGGGGAGCATGTACACATCCATGCCGCTGGAAATATGCTGTTGTTGAGG
AGAACAGACCGGGACAGTTCATGCCTGTATATGAGAATGAGAGAGGAACATATATATTTAACTCTAAGGATTTATGTATG
ATAGAGCATATTCCAGAGATGGTAAGTTCAGGTATTGACTCATTTAAGATTGAAGGCCGTATGAAGACAGCACTGTATGT
TGCAACTGTTGCAAGAACTTACAGACTTGCTATTGATGATTTTATAGAAGACCCGGAGAAGTACAAGGCTAGAATCCCAT
TCTATAAGAGTGAGATAAGCAAATGTACTTACAGACAGTATACAACAGGTTTCTTCTTTGGAAAGCCAGACGAGAATACA
CAGATATATGACAGTAACACATATATCAGGGAATACACATATCTTGGTATTGTAGGAGATGTTAACGAGCAGGGACTTTA
CCATATTGAGCAGCGTAACAAGTTCTCAGTTGGAGAGACAATTGAGGTTATGAAGCCGGACGGACAGAATATAGAAGTCA
CAGTTAAGCGTATTGTTGATGAGAATGGTAAGGATATGGAGAGCTGTCCACATCCTAAGCAGAACCTTTATATTGATTTG
GGAATCCAGCTTGATAAGTATGATATCTTAAGACGTCAGGAAGAAGAAACAGAAGTTAACAGTTAA

Upstream 100 bases:

>100_bases
AGTATGTGTATGAGCTTACTCATTCAAAGGATTTTGTGACATCAATTGTTCCTATTGGAGATGGAATTACACTTAGTGTA
AAGCAGTAAAGGAGAATAAT

Downstream 100 bases:

>100_bases
ATTAAAGAGACAGTTGGATAGGCAATTAAAGGCACCTTTACACATATGATATATAAAAATGTGTAGGGGTGCCTTTTTGA
AAACATTTGAAAAACCATTA

Product: protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 420

Protein sequence:

>421_residues
MAGHMYNGRETELLIPASSLEVLKIAVIFGADAVYIGGEAFGLRAKAKNFSIEDMKEGVKFAHERNVKVYVTANILAHNY
DLEGARAYFEELKEVGPDALIISDPGMFTIAKEVLPDIDIHISTQANNTNYMTYNFWWNQGAKRVVSARELSLEEIKEIR
EHIPDEMEIETFMHGAMCISYSGRCLLSSFLAGRDANRGACTHPCRWKYAVVEENRPGQFMPVYENERGTYIFNSKDLCM
IEHIPEMVSSGIDSFKIEGRMKTALYVATVARTYRLAIDDFIEDPEKYKARIPFYKSEISKCTYRQYTTGFFFGKPDENT
QIYDSNTYIREYTYLGIVGDVNEQGLYHIEQRNKFSVGETIEVMKPDGQNIEVTVKRIVDENGKDMESCPHPKQNLYIDL
GIQLDKYDILRRQEEETEVNS

Sequences:

>Translated_421_residues
MAGHMYNGRETELLIPASSLEVLKIAVIFGADAVYIGGEAFGLRAKAKNFSIEDMKEGVKFAHERNVKVYVTANILAHNY
DLEGARAYFEELKEVGPDALIISDPGMFTIAKEVLPDIDIHISTQANNTNYMTYNFWWNQGAKRVVSARELSLEEIKEIR
EHIPDEMEIETFMHGAMCISYSGRCLLSSFLAGRDANRGACTHPCRWKYAVVEENRPGQFMPVYENERGTYIFNSKDLCM
IEHIPEMVSSGIDSFKIEGRMKTALYVATVARTYRLAIDDFIEDPEKYKARIPFYKSEISKCTYRQYTTGFFFGKPDENT
QIYDSNTYIREYTYLGIVGDVNEQGLYHIEQRNKFSVGETIEVMKPDGQNIEVTVKRIVDENGKDMESCPHPKQNLYIDL
GIQLDKYDILRRQEEETEVNS
>Mature_420_residues
AGHMYNGRETELLIPASSLEVLKIAVIFGADAVYIGGEAFGLRAKAKNFSIEDMKEGVKFAHERNVKVYVTANILAHNYD
LEGARAYFEELKEVGPDALIISDPGMFTIAKEVLPDIDIHISTQANNTNYMTYNFWWNQGAKRVVSARELSLEEIKEIRE
HIPDEMEIETFMHGAMCISYSGRCLLSSFLAGRDANRGACTHPCRWKYAVVEENRPGQFMPVYENERGTYIFNSKDLCMI
EHIPEMVSSGIDSFKIEGRMKTALYVATVARTYRLAIDDFIEDPEKYKARIPFYKSEISKCTYRQYTTGFFFGKPDENTQ
IYDSNTYIREYTYLGIVGDVNEQGLYHIEQRNKFSVGETIEVMKPDGQNIEVTVKRIVDENGKDMESCPHPKQNLYIDLG
IQLDKYDILRRQEEETEVNS

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1788397, Length=445, Percent_Identity=36.8539325842697, Blast_Score=265, Evalue=5e-72,
Organism=Escherichia coli, GI87081910, Length=375, Percent_Identity=32.5333333333333, Blast_Score=184, Evalue=8e-48,
Organism=Escherichia coli, GI1789548, Length=330, Percent_Identity=30.9090909090909, Blast_Score=148, Evalue=7e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 48252; Mature: 48121

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHMYNGRETELLIPASSLEVLKIAVIFGADAVYIGGEAFGLRAKAKNFSIEDMKEGVK
CCCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEECCCEEEEEEECCCCCHHHHHHHHH
FAHERNVKVYVTANILAHNYDLEGARAYFEELKEVGPDALIISDPGMFTIAKEVLPDIDI
HHHHCCEEEEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCEE
HISTQANNTNYMTYNFWWNQGAKRVVSARELSLEEIKEIREHIPDEMEIETFMHGAMCIS
EEEEECCCCEEEEEEEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCEEHHHHHCCEEEEE
YSGRCLLSSFLAGRDANRGACTHPCRWKYAVVEENRPGQFMPVYENERGTYIFNSKDLCM
CCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEECCCCEEH
IEHIPEMVSSGIDSFKIEGRMKTALYVATVARTYRLAIDDFIEDPEKYKARIPFYKSEIS
HHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCHHHHHH
KCTYRQYTTGFFFGKPDENTQIYDSNTYIREYTYLGIVGDVNEQGLYHIEQRNKFSVGET
HHHHHEEECEEEECCCCCCCEEEECCCEEEEEEEEEEEECCCCCCCEEEECCCCCCCCCE
IEVMKPDGQNIEVTVKRIVDENGKDMESCPHPKQNLYIDLGIQLDKYDILRRQEEETEVN
EEEECCCCCCEEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEEECHHHHHHCCCCHHCCC
S
C
>Mature Secondary Structure 
AGHMYNGRETELLIPASSLEVLKIAVIFGADAVYIGGEAFGLRAKAKNFSIEDMKEGVK
CCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEECCCEEEEEEECCCCCHHHHHHHHH
FAHERNVKVYVTANILAHNYDLEGARAYFEELKEVGPDALIISDPGMFTIAKEVLPDIDI
HHHHCCEEEEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCEE
HISTQANNTNYMTYNFWWNQGAKRVVSARELSLEEIKEIREHIPDEMEIETFMHGAMCIS
EEEEECCCCEEEEEEEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCEEHHHHHCCEEEEE
YSGRCLLSSFLAGRDANRGACTHPCRWKYAVVEENRPGQFMPVYENERGTYIFNSKDLCM
CCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEECCCCEEH
IEHIPEMVSSGIDSFKIEGRMKTALYVATVARTYRLAIDDFIEDPEKYKARIPFYKSEIS
HHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCHHHHHH
KCTYRQYTTGFFFGKPDENTQIYDSNTYIREYTYLGIVGDVNEQGLYHIEQRNKFSVGET
HHHHHEEECEEEECCCCCCCEEEECCCEEEEEEEEEEEECCCCCCCEEEECCCCCCCCCE
IEVMKPDGQNIEVTVKRIVDENGKDMESCPHPKQNLYIDLGIQLDKYDILRRQEEETEVN
EEEECCCCCCEEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEEECHHHHHHCCCCHHCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]