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The map label for this gene is yqgF [C]

Identifier: 238916712

GI number: 238916712

Start: 785401

End: 785823

Strand: Direct

Name: yqgF [C]

Synonym: EUBELI_00774

Alternate gene names: 238916712

Gene position: 785401-785823 (Clockwise)

Preceding gene: 238916711

Following gene: 238916713

Centisome position: 36.63

GC content: 42.08

Gene sequence:

>423_bases
ATGAGAATTATAGGCTTAGATGTCGGAACGAAGACTGTTGGAGTTGCCTTGAGCGATCCGCTTGGGATAACTGCACAGCC
TTTCGAAACGATAACAAGAAAAGAGAATAATAAGTTACGAAGAACTTATGCCAGGATAGAACAGATTATATCCGAATATG
ATGTAACTGAAATCGTGGTTGGCTATCCTAAGAACATGGATGATACTATTGGGGAACGGGCTAAGGCCTGTGAAGAATTT
GCAGCAGCACTGGAAAGACGAACAGGATTACCTGTTACACTGTGGGATGAAAGACTTACTACAGTTGAAGCAGACGAAGT
CCTTGAAGAATGCGGGATGAGGCGAGAAAACCGCAAGACAGTTATTGATCAGCTTGCGGCTGTTTTTATTTTGCGTGGAT
ATATGGAATCTAAACAGAAGTAA

Upstream 100 bases:

>100_bases
ACAAGCCATAACAATGCAAGAAGCCTTATTATGAAGGCTGAAAGAGACGAACTTGTTGAAGAGGTTGTAAGATATTTCAT
TGAAGGTAAAGGCTTATAAT

Downstream 100 bases:

>100_bases
TATTTGGAGGATTTGTTTTTCATGGAAAAGCTTGAATTTATTGACGAGAACGGTGAGAAGACACAATTTTATGTGATTGA
AGAAACTAGAATTAACGGAA

Product: Holliday junction resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MRIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVGYPKNMDDTIGERAKACEEF
AAALERRTGLPVTLWDERLTTVEADEVLEECGMRRENRKTVIDQLAAVFILRGYMESKQK

Sequences:

>Translated_140_residues
MRIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVGYPKNMDDTIGERAKACEEF
AAALERRTGLPVTLWDERLTTVEADEVLEECGMRRENRKTVIDQLAAVFILRGYMESKQK
>Mature_140_residues
MRIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVGYPKNMDDTIGERAKACEEF
AAALERRTGLPVTLWDERLTTVEADEVLEECGMRRENRKTVIDQLAAVFILRGYMESKQK

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=134, Percent_Identity=36.5671641791045, Blast_Score=79, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_EUBE2 (C4Z578)

Other databases:

- EMBL:   CP001104
- RefSeq:   YP_002930229.1
- GeneID:   7957322
- GenomeReviews:   CP001104_GR
- KEGG:   eel:EUBELI_00774
- OMA:   VLILQNY
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15880; Mature: 15880

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVV
CEEEEECCCCHHEEEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHEE
GYPKNMDDTIGERAKACEEFAAALERRTGLPVTLWDERLTTVEADEVLEECGMRRENRKT
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHCCHHHHHHHHCCCCCHHHH
VIDQLAAVFILRGYMESKQK
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVV
CEEEEECCCCHHEEEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHEE
GYPKNMDDTIGERAKACEEFAAALERRTGLPVTLWDERLTTVEADEVLEECGMRRENRKT
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHCCHHHHHHHHCCCCCHHHH
VIDQLAAVFILRGYMESKQK
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA