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The map label for this gene is xynB [H]

Identifier: 238916705

GI number: 238916705

Start: 779261

End: 780109

Strand: Direct

Name: xynB [H]

Synonym: EUBELI_00767

Alternate gene names: 238916705

Gene position: 779261-780109 (Clockwise)

Preceding gene: 238916704

Following gene: 238916706

Centisome position: 36.34

GC content: 40.4

Gene sequence:

>849_bases
ATGTTACACGAAACATTTACTATAGAATTACCATATGAGGAGCTGGGGATAAAGCAGCAGGGCAGTGCCACAATAACAAC
TTATATCAAGGATGTGTTCCCTAATGATCAGGATCCGTTTAAGAGACCTCTTATTGTTATCTGTCCGGGTGGCGGATATA
ATCATCATTCTCCAAGAGAAGGAGAAGCTATAGCTATTAAGATGCTTGATATGGGGTATAATGCTGTTGTATTGAGATAC
AGTCTTGCACCTGTTACGTATCCTGCACAGCTTTTTGAGGCAGCCTATACAATGAAGTATGTAAGAGATAATGCAGCAGA
ATGGGATGTTGATCCTGACAAAATCATTATCGCAGGGTTTTCAGCAGGAGGTCATGTTGCCGGACTTCTTGGAACGGGAT
GGAATTCAAAAAGACTTGATTATCTTCTGGAAAATGTACTTCACTGCAGTCATGAGTATGTTAAGCCTGATGGCATGCTG
TTAGGTTATCCTGTAATTACATCAGGAATTGATGCACACAGGGCATCATTTGAGAGAAGTCTTGGGGAAAAATATGATGA
GTTTATAGATGAAGTGTCTATAGAAAAGAGAGTGGATAAGGACACACCACCTGCATTCATATGGCATACATGTGAAGATA
AGACAGTTCCGCTTGAAAATTCATTACTTATGGTAGAGGCGTTAAGAAAACAGGAGATTCCGTTTGATTATCATGTATAT
GCTAAAGGTACTCATGGTCTTGGACTTGGCACACGAGAGACTGCGACTAAGAATATGGGACATTATGAACCACAGGTGTC
ATCATGGACGGAATGCTTTAAACAGTGGATGGGGGTAATGTATGAATAA

Upstream 100 bases:

>100_bases
CAGCTCGTCATAAATCGACCACACACGAAAATATACGCACATCACCACCACTACACTATAGACATAATATACAGAATAAT
TCAGTTAGGAGGAGAAAATA

Downstream 100 bases:

>100_bases
AAACTTATACGGCCTGATGAACTGGCCGGAGATAGAGGGAATTGTATATGCAGAATGTGACAAGCCAAAAGAGCTGCTTG
GTGCGCATGTTACCGGTAAG

Product: endo-1,4-beta-xylanase

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MLHETFTIELPYEELGIKQQGSATITTYIKDVFPNDQDPFKRPLIVICPGGGYNHHSPREGEAIAIKMLDMGYNAVVLRY
SLAPVTYPAQLFEAAYTMKYVRDNAAEWDVDPDKIIIAGFSAGGHVAGLLGTGWNSKRLDYLLENVLHCSHEYVKPDGML
LGYPVITSGIDAHRASFERSLGEKYDEFIDEVSIEKRVDKDTPPAFIWHTCEDKTVPLENSLLMVEALRKQEIPFDYHVY
AKGTHGLGLGTRETATKNMGHYEPQVSSWTECFKQWMGVMYE

Sequences:

>Translated_282_residues
MLHETFTIELPYEELGIKQQGSATITTYIKDVFPNDQDPFKRPLIVICPGGGYNHHSPREGEAIAIKMLDMGYNAVVLRY
SLAPVTYPAQLFEAAYTMKYVRDNAAEWDVDPDKIIIAGFSAGGHVAGLLGTGWNSKRLDYLLENVLHCSHEYVKPDGML
LGYPVITSGIDAHRASFERSLGEKYDEFIDEVSIEKRVDKDTPPAFIWHTCEDKTVPLENSLLMVEALRKQEIPFDYHVY
AKGTHGLGLGTRETATKNMGHYEPQVSSWTECFKQWMGVMYE
>Mature_282_residues
MLHETFTIELPYEELGIKQQGSATITTYIKDVFPNDQDPFKRPLIVICPGGGYNHHSPREGEAIAIKMLDMGYNAVVLRY
SLAPVTYPAQLFEAAYTMKYVRDNAAEWDVDPDKIIIAGFSAGGHVAGLLGTGWNSKRLDYLLENVLHCSHEYVKPDGML
LGYPVITSGIDAHRASFERSLGEKYDEFIDEVSIEKRVDKDTPPAFIWHTCEDKTVPLENSLLMVEALRKQEIPFDYHVY
AKGTHGLGLGTRETATKNMGHYEPQVSSWTECFKQWMGVMYE

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 31861; Mature: 31861

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHETFTIELPYEELGIKQQGSATITTYIKDVFPNDQDPFKRPLIVICPGGGYNHHSPRE
CCCCEEEEEECHHHHCCCCCCCEEHEEHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCC
GEAIAIKMLDMGYNAVVLRYSLAPVTYPAQLFEAAYTMKYVRDNAAEWDVDPDKIIIAGF
CCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE
SAGGHVAGLLGTGWNSKRLDYLLENVLHCSHEYVKPDGMLLGYPVITSGIDAHRASFERS
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCHHHHHHHHHH
LGEKYDEFIDEVSIEKRVDKDTPPAFIWHTCEDKTVPLENSLLMVEALRKQEIPFDYHVY
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEE
AKGTHGLGLGTRETATKNMGHYEPQVSSWTECFKQWMGVMYE
EECCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLHETFTIELPYEELGIKQQGSATITTYIKDVFPNDQDPFKRPLIVICPGGGYNHHSPRE
CCCCEEEEEECHHHHCCCCCCCEEHEEHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCC
GEAIAIKMLDMGYNAVVLRYSLAPVTYPAQLFEAAYTMKYVRDNAAEWDVDPDKIIIAGF
CCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE
SAGGHVAGLLGTGWNSKRLDYLLENVLHCSHEYVKPDGMLLGYPVITSGIDAHRASFERS
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCHHHHHHHHHH
LGEKYDEFIDEVSIEKRVDKDTPPAFIWHTCEDKTVPLENSLLMVEALRKQEIPFDYHVY
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEE
AKGTHGLGLGTRETATKNMGHYEPQVSSWTECFKQWMGVMYE
EECCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]