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The map label for this gene is cspC [H]

Identifier: 238916449

GI number: 238916449

Start: 511978

End: 512232

Strand: Direct

Name: cspC [H]

Synonym: EUBELI_00506

Alternate gene names: 238916449

Gene position: 511978-512232 (Clockwise)

Preceding gene: 238916448

Following gene: 238916450

Centisome position: 23.88

GC content: 38.43

Gene sequence:

>255_bases
ATGGTAATATTAGTAAGGTGTTTCAAACATCAAGATTTTTTTTTGGAGGTACTTGAAATGAAGGGTACAGTTAAGTGGTT
CAACAACCAGAAGGGTTACGGCTTTATCAGTGATGAGTCAGGAAAGGATGTATTCGTACATTATTCTGGACTTAACATGG
AAGGCTTCAAGTCTTTAGAGGAAGGCGCTCAGGTTGAGTTTGATGTAACAGAAGGCGCTAAGGGTCCTCAGGCTACTAAT
GTAACAAAATTATAA

Upstream 100 bases:

>100_bases
GTGGAACTCAGCAGGACAACTTTTGCTGTAAAACAACAGGCTAAGCAATAGTTGCAACAGTAGTAAAAATGCCATCTTTC
ATTGACAGCGGGTACCTGAA

Downstream 100 bases:

>100_bases
TCGGTTGTTTGCAGTGTGCCTTTTTTATATTATATATAGAAAGATATATTGTTACACAATAGGATTATGGGGGCGGTCAA
GACAGGATATTGACCGTCTT

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 84; Mature: 84

Protein sequence:

>84_residues
MVILVRCFKHQDFFLEVLEMKGTVKWFNNQKGYGFISDESGKDVFVHYSGLNMEGFKSLEEGAQVEFDVTEGAKGPQATN
VTKL

Sequences:

>Translated_84_residues
MVILVRCFKHQDFFLEVLEMKGTVKWFNNQKGYGFISDESGKDVFVHYSGLNMEGFKSLEEGAQVEFDVTEGAKGPQATN
VTKL
>Mature_84_residues
MVILVRCFKHQDFFLEVLEMKGTVKWFNNQKGYGFISDESGKDVFVHYSGLNMEGFKSLEEGAQVEFDVTEGAKGPQATN
VTKL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI156415990, Length=70, Percent_Identity=47.1428571428571, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI224586882, Length=66, Percent_Identity=48.4848484848485, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786841, Length=67, Percent_Identity=59.7014925373134, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=56.7164179104478, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=53.6231884057971, Blast_Score=79, Evalue=6e-17,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=50.7692307692308, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=53.125, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=47.7611940298507, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=50.7462686567164, Blast_Score=71, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71983225, Length=55, Percent_Identity=52.7272727272727, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71983217, Length=55, Percent_Identity=52.7272727272727, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 9497; Mature: 9497

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVILVRCFKHQDFFLEVLEMKGTVKWFNNQKGYGFISDESGKDVFVHYSGLNMEGFKSLE
CEEEEEECCCCCHHHHHHHCCCEEEEECCCCCCEEEECCCCCEEEEEECCCCCHHHHHHC
EGAQVEFDVTEGAKGPQATNVTKL
CCCEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MVILVRCFKHQDFFLEVLEMKGTVKWFNNQKGYGFISDESGKDVFVHYSGLNMEGFKSLE
CEEEEEECCCCCHHHHHHHCCCEEEEECCCCCCEEEECCCCCEEEEEECCCCCHHHHHHC
EGAQVEFDVTEGAKGPQATNVTKL
CCCEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]