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The map label for this gene is yciR [C]

Identifier: 238916365

GI number: 238916365

Start: 428900

End: 431170

Strand: Direct

Name: yciR [C]

Synonym: EUBELI_00418

Alternate gene names: 238916365

Gene position: 428900-431170 (Clockwise)

Preceding gene: 238916364

Following gene: 238916366

Centisome position: 20.0

GC content: 34.83

Gene sequence:

>2271_bases
ATGAGAGTGTTTTATGGGCTTATTATTACGGCGGTAATTTTAATGATTGGGGCGTGTGCTTTAAAGGCATATAAAAAAGA
GGGTGCACTGGCAAGAGTTGTGTTTTTATATGAGCTTGGTGCATTTATATGTGGGATAATATTTTTAGTGTATACATATG
TTCCAGGAACCACCATTACAGTTCTGTGTAAGGGACTTATTATGGCGAGCTTTGACTGGCTTCTTATACTTCTTATGTAT
TATACCCAGTATTATACAGGCATGTTTAAGGGCATTGTGGGTGTAAAAGTTTTTATGATTGCATATTCGCTGCTTGAGAC
TGTTGCATTTCTGATTAATACATGGACGAGATGGATATTTGATATAACATATATATCGGATGACCAGATAATTGTCCAGT
TTGCAAAAGGTAATGTTCTGGGCCGGTTACATTATGTATTTGCTTATGGCATTATGTTGCTGCTTATTTTAAGTTATATA
GTAATGGTTGAGAGGATGTCAAGATTCTACAGATTCAGGTATTTTGCTATTCTCATATTATTATTAGCTGCATCTTTGCT
TGATATAATGACTACGTGGTCTGATTCAATATATGACATGTCAATGGCTGCATTTGGCATCATGTCTATACTCATATATT
ATCTTACATACAGGTATGTTCCTAATGAGCTTATTGAGAATACATTTTCACTTATAATCAGGGATATGAATAGTGGAATT
ATATGCTTTGATAATGCTGGAAGATGTATATATTGTAATGGTATTGTTAAAGAAATGTATTCTATTACTGATAATATTAA
TGAAGTGGAGCATAATTATGCAAGCTGGCTTCATACTCAGACAGAGCATGATAATAAGAAATTCAGGCAGACAATCAGCG
TGGGAGATGAGAGGAGAAGCATCGATATTTCATATAATCGTGTATATGATGATAAGCATAATTTTATATGTGATTATTTT
ATATTTAATGATCGTACGGAAGCTGTTGAGCTTTTAGAATATGAAAAGTTCAGAGCTACACATGATAATCTCACGGGACT
TCTTAATAAGGAGCAGTTCTATGAGGAAACTGCCAATGTAGTGAGAAACGACAGGAATCACACATATTGTCTGGTGTGCA
GCAATATTAAAGATTTTAAGCTTGTTAATGAGCTTTTTGGAATCGAAAAGGGTGATGAGATTATTAAAATGCAGGCGGGG
CTTATCAAGGCTTCATCTGAAAGTGGCTATATATGTGGAAGAATCCAGAATGACAGATTTGCTGTGTGTATGCCGAAGGA
CAGTTTTAAGAATGAAATAATGCAGAATAGTATTGTAAGTATGCAGGACAGATTCAACAATGCATCATTTAAGATAAGGG
TTGTAGTTGGTGTTTATGATATTGAAGATGTTGATGAGCCTGTAAGTAATATGTGTGATAAAGCATTTATTGCGAGCGAG
ACTATTAAGAATAATTATGAAACTAATATTGCATACTATGATGATAAGCTGTTAAAGAGAACTCTTGAAGAAAGAAGAGT
TATCAGTGAGTTTGAAGGGGCAATTGAGAAGAAAGAATTTAAAATGTTTCTTCAGCCACAGGTTAATACTCATGGTAAGG
CTTATGGAGCAGAGGCGCTTGTGCGCTGGCAGCATCCTGAGAGAGGGTTGCTGTCGCCATTCTTCTTCATTGATATTCTG
GAGACTACAGGTCTTATATATAAGCTTGACATGTATATGTGGGAATGTGCAGCAGCTAAATTAAGTGAATGGAAGAAGAA
GGGTGATACGGTTCATTATATCTCTGTAAATATATCTACTAAGGATTTTTATCTTATAGATGTATATGAGGTTATTACAT
CAATTGTCAAGAAATATGATATTGAACCTAAGATGTTAAAGCTAGAGATTACCGAGACAGCACTTATGTCTGATCTTAAG
AAGAATATGGAGGTAATTAAGTCTCTCAGGGATTATGGATTTAAGATAGAGATTGATGATTTTGGAAGTGGATATTCTTC
GTTGAATATGTTAAAAGATATAAGTGCAGATGTTCTTAAGATTGATATGGCATTCCTGCGTGCTACAGAGAATGAGGTTA
AAGGACAGGATATTCTGGAGACTATTATTTCTCTTGGTGGAAAGCTTGGAATGGAAGTAATTACTGAAGGAGTAGAGACA
GACAAACAGCTTATTATGCTGACAGAGATGGGGTGTCATATATTCCAGGGATATTATTTCTCAAAGCCTATACCAGTCGA
AGAATTTGAACAAAAATACATGAATGAATAA

Upstream 100 bases:

>100_bases
AAGAATCTGGCTGTACTACATTTGCAATAATAAGAAGTTTGCGCTATAATACTATTTATACAAGACGTGAAATTTAGTAT
TGATTTAGGAGATATCGCTT

Downstream 100 bases:

>100_bases
TGGGAGGAAGTTATGAGCGAGAATTGTTCAGGAAGTTGCTCAAGCTGCAGTTCAGACTGCGAATCAAGAAAAGGACCACA
GATATTAAGAAATGCCAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 756; Mature: 756

Protein sequence:

>756_residues
MRVFYGLIITAVILMIGACALKAYKKEGALARVVFLYELGAFICGIIFLVYTYVPGTTITVLCKGLIMASFDWLLILLMY
YTQYYTGMFKGIVGVKVFMIAYSLLETVAFLINTWTRWIFDITYISDDQIIVQFAKGNVLGRLHYVFAYGIMLLLILSYI
VMVERMSRFYRFRYFAILILLLAASLLDIMTTWSDSIYDMSMAAFGIMSILIYYLTYRYVPNELIENTFSLIIRDMNSGI
ICFDNAGRCIYCNGIVKEMYSITDNINEVEHNYASWLHTQTEHDNKKFRQTISVGDERRSIDISYNRVYDDKHNFICDYF
IFNDRTEAVELLEYEKFRATHDNLTGLLNKEQFYEETANVVRNDRNHTYCLVCSNIKDFKLVNELFGIEKGDEIIKMQAG
LIKASSESGYICGRIQNDRFAVCMPKDSFKNEIMQNSIVSMQDRFNNASFKIRVVVGVYDIEDVDEPVSNMCDKAFIASE
TIKNNYETNIAYYDDKLLKRTLEERRVISEFEGAIEKKEFKMFLQPQVNTHGKAYGAEALVRWQHPERGLLSPFFFIDIL
ETTGLIYKLDMYMWECAAAKLSEWKKKGDTVHYISVNISTKDFYLIDVYEVITSIVKKYDIEPKMLKLEITETALMSDLK
KNMEVIKSLRDYGFKIEIDDFGSGYSSLNMLKDISADVLKIDMAFLRATENEVKGQDILETIISLGGKLGMEVITEGVET
DKQLIMLTEMGCHIFQGYYFSKPIPVEEFEQKYMNE

Sequences:

>Translated_756_residues
MRVFYGLIITAVILMIGACALKAYKKEGALARVVFLYELGAFICGIIFLVYTYVPGTTITVLCKGLIMASFDWLLILLMY
YTQYYTGMFKGIVGVKVFMIAYSLLETVAFLINTWTRWIFDITYISDDQIIVQFAKGNVLGRLHYVFAYGIMLLLILSYI
VMVERMSRFYRFRYFAILILLLAASLLDIMTTWSDSIYDMSMAAFGIMSILIYYLTYRYVPNELIENTFSLIIRDMNSGI
ICFDNAGRCIYCNGIVKEMYSITDNINEVEHNYASWLHTQTEHDNKKFRQTISVGDERRSIDISYNRVYDDKHNFICDYF
IFNDRTEAVELLEYEKFRATHDNLTGLLNKEQFYEETANVVRNDRNHTYCLVCSNIKDFKLVNELFGIEKGDEIIKMQAG
LIKASSESGYICGRIQNDRFAVCMPKDSFKNEIMQNSIVSMQDRFNNASFKIRVVVGVYDIEDVDEPVSNMCDKAFIASE
TIKNNYETNIAYYDDKLLKRTLEERRVISEFEGAIEKKEFKMFLQPQVNTHGKAYGAEALVRWQHPERGLLSPFFFIDIL
ETTGLIYKLDMYMWECAAAKLSEWKKKGDTVHYISVNISTKDFYLIDVYEVITSIVKKYDIEPKMLKLEITETALMSDLK
KNMEVIKSLRDYGFKIEIDDFGSGYSSLNMLKDISADVLKIDMAFLRATENEVKGQDILETIISLGGKLGMEVITEGVET
DKQLIMLTEMGCHIFQGYYFSKPIPVEEFEQKYMNE
>Mature_756_residues
MRVFYGLIITAVILMIGACALKAYKKEGALARVVFLYELGAFICGIIFLVYTYVPGTTITVLCKGLIMASFDWLLILLMY
YTQYYTGMFKGIVGVKVFMIAYSLLETVAFLINTWTRWIFDITYISDDQIIVQFAKGNVLGRLHYVFAYGIMLLLILSYI
VMVERMSRFYRFRYFAILILLLAASLLDIMTTWSDSIYDMSMAAFGIMSILIYYLTYRYVPNELIENTFSLIIRDMNSGI
ICFDNAGRCIYCNGIVKEMYSITDNINEVEHNYASWLHTQTEHDNKKFRQTISVGDERRSIDISYNRVYDDKHNFICDYF
IFNDRTEAVELLEYEKFRATHDNLTGLLNKEQFYEETANVVRNDRNHTYCLVCSNIKDFKLVNELFGIEKGDEIIKMQAG
LIKASSESGYICGRIQNDRFAVCMPKDSFKNEIMQNSIVSMQDRFNNASFKIRVVVGVYDIEDVDEPVSNMCDKAFIASE
TIKNNYETNIAYYDDKLLKRTLEERRVISEFEGAIEKKEFKMFLQPQVNTHGKAYGAEALVRWQHPERGLLSPFFFIDIL
ETTGLIYKLDMYMWECAAAKLSEWKKKGDTVHYISVNISTKDFYLIDVYEVITSIVKKYDIEPKMLKLEITETALMSDLK
KNMEVIKSLRDYGFKIEIDDFGSGYSSLNMLKDISADVLKIDMAFLRATENEVKGQDILETIISLGGKLGMEVITEGVET
DKQLIMLTEMGCHIFQGYYFSKPIPVEEFEQKYMNE

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=440, Percent_Identity=26.3636363636364, Blast_Score=176, Evalue=4e-45,
Organism=Escherichia coli, GI87081921, Length=346, Percent_Identity=29.1907514450867, Blast_Score=155, Evalue=1e-38,
Organism=Escherichia coli, GI226510982, Length=292, Percent_Identity=31.8493150684932, Blast_Score=155, Evalue=1e-38,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=33.1967213114754, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI87081743, Length=249, Percent_Identity=32.9317269076305, Blast_Score=143, Evalue=4e-35,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=30.9236947791165, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=31.5126050420168, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=31.3008130081301, Blast_Score=125, Evalue=9e-30,
Organism=Escherichia coli, GI87081845, Length=232, Percent_Identity=31.8965517241379, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI87082096, Length=327, Percent_Identity=24.4648318042813, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1787055, Length=285, Percent_Identity=29.1228070175439, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788849, Length=271, Percent_Identity=28.0442804428044, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1787410, Length=136, Percent_Identity=28.6764705882353, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 87592; Mature: 87592

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVFYGLIITAVILMIGACALKAYKKEGALARVVFLYELGAFICGIIFLVYTYVPGTTIT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VLCKGLIMASFDWLLILLMYYTQYYTGMFKGIVGVKVFMIAYSLLETVAFLINTWTRWIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
DITYISDDQIIVQFAKGNVLGRLHYVFAYGIMLLLILSYIVMVERMSRFYRFRYFAILIL
EEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAASLLDIMTTWSDSIYDMSMAAFGIMSILIYYLTYRYVPNELIENTFSLIIRDMNSGI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCE
ICFDNAGRCIYCNGIVKEMYSITDNINEVEHNYASWLHTQTEHDNKKFRQTISVGDERRS
EEEECCCCEEEECHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCE
IDISYNRVYDDKHNFICDYFIFNDRTEAVELLEYEKFRATHDNLTGLLNKEQFYEETANV
EEEEEHEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHH
VRNDRNHTYCLVCSNIKDFKLVNELFGIEKGDEIIKMQAGLIKASSESGYICGRIQNDRF
HHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHCEEEECCCCCEEEEEECCCEE
AVCMPKDSFKNEIMQNSIVSMQDRFNNASFKIRVVVGVYDIEDVDEPVSNMCDKAFIASE
EEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHH
TIKNNYETNIAYYDDKLLKRTLEERRVISEFEGAIEKKEFKMFLQPQVNTHGKAYGAEAL
HHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHH
VRWQHPERGLLSPFFFIDILETTGLIYKLDMYMWECAAAKLSEWKKKGDTVHYISVNIST
EEECCCCCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECC
KDFYLIDVYEVITSIVKKYDIEPKMLKLEITETALMSDLKKNMEVIKSLRDYGFKIEIDD
CCEEEEEHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
FGSGYSSLNMLKDISADVLKIDMAFLRATENEVKGQDILETIISLGGKLGMEVITEGVET
CCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHCCHHHHHHHHHHCCCHHHHHHHHHCCCC
DKQLIMLTEMGCHIFQGYYFSKPIPVEEFEQKYMNE
CHHEEEEHHHCHHHHCCEECCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MRVFYGLIITAVILMIGACALKAYKKEGALARVVFLYELGAFICGIIFLVYTYVPGTTIT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VLCKGLIMASFDWLLILLMYYTQYYTGMFKGIVGVKVFMIAYSLLETVAFLINTWTRWIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
DITYISDDQIIVQFAKGNVLGRLHYVFAYGIMLLLILSYIVMVERMSRFYRFRYFAILIL
EEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAASLLDIMTTWSDSIYDMSMAAFGIMSILIYYLTYRYVPNELIENTFSLIIRDMNSGI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCE
ICFDNAGRCIYCNGIVKEMYSITDNINEVEHNYASWLHTQTEHDNKKFRQTISVGDERRS
EEEECCCCEEEECHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCE
IDISYNRVYDDKHNFICDYFIFNDRTEAVELLEYEKFRATHDNLTGLLNKEQFYEETANV
EEEEEHEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHH
VRNDRNHTYCLVCSNIKDFKLVNELFGIEKGDEIIKMQAGLIKASSESGYICGRIQNDRF
HHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHCEEEECCCCCEEEEEECCCEE
AVCMPKDSFKNEIMQNSIVSMQDRFNNASFKIRVVVGVYDIEDVDEPVSNMCDKAFIASE
EEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHH
TIKNNYETNIAYYDDKLLKRTLEERRVISEFEGAIEKKEFKMFLQPQVNTHGKAYGAEAL
HHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHH
VRWQHPERGLLSPFFFIDILETTGLIYKLDMYMWECAAAKLSEWKKKGDTVHYISVNIST
EEECCCCCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECC
KDFYLIDVYEVITSIVKKYDIEPKMLKLEITETALMSDLKKNMEVIKSLRDYGFKIEIDD
CCEEEEEHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
FGSGYSSLNMLKDISADVLKIDMAFLRATENEVKGQDILETIISLGGKLGMEVITEGVET
CCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHCCHHHHHHHHHHCCCHHHHHHHHHCCCC
DKQLIMLTEMGCHIFQGYYFSKPIPVEEFEQKYMNE
CHHEEEEHHHCHHHHCCEECCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]