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The map label for this gene is ydiC [H]

Identifier: 238916342

GI number: 238916342

Start: 407247

End: 407948

Strand: Direct

Name: ydiC [H]

Synonym: EUBELI_00376

Alternate gene names: 238916342

Gene position: 407247-407948 (Clockwise)

Preceding gene: 238916341

Following gene: 238916343

Centisome position: 18.99

GC content: 42.02

Gene sequence:

>702_bases
ATGAGAATATTAGCGATAGAAAGTTCAGCAGTTACAGCATCAGTTGCGATTCTTGAAGATGATACACTTGTTGTTGAATA
CACAATTAATCATAAGATGACACATTCACAGACACTTCTTCCAATGATAGATGATATATTTTCAATGGTTCAGTTAAAGC
CTGATGATGTTGATGTTATAGCAGTATCAAAGGGACCGGGTTCGTTCACGGGCCTAAGAATTGGTGCGGCTACAGGCAAG
GGAATTGCACTTGCGCTTGACAAAAAGATGGTGGCAGTACCGACACTTGCGGCTATGGCATATAATTTATATGGAGACAG
CAGATACATATGCCCTGTAATGGATGCAAGAAGAAAGCACCTGTACAGTGGAATATATACATTTGACGGCGACAGGCTTA
TTACAGTAAGAGATGTTAATCTTGAGTCATATGATGAGCTTGCAGAAGAACTTGCTGGACTTGATAGACAGGTTGTATTA
GTAGGTGATGGTGTAGATGTCGCAGGTGATGTCCTTAAAGAGCAGCTTGGTGACAAATGTGTTCTTGCACCGGCTCATAT
CAAGACACAGAGAGCTGGTTCAGTAGCGCTTTTAGCAAAGCAGATGGCAGATAATGGTGAGTATACAGATGCTGATGAGT
TAAAGCCTGATTATCTGCGCCCTTCACAGGCAGAAAGAGAGAAGGCACAGCATGAGTCTTAA

Upstream 100 bases:

>100_bases
TACAGGAGATAATTCCAGATAATGCGATAGAGATAGTTATAGAAAAAGACCTTGAAAAAGGCTTTGATTACAGGAAAATA
ACTATCGGGCAGGAGGCAGT

Downstream 100 bases:

>100_bases
ATATGTGATAAGACCGATGACGGAAGATGATACATTTGCAGTGGAACTGATAGAACAGGTAATATTCTCGCTTCCATGGT
CGCAGAAATCATTTGCAGAT

Product: O-sialoglycoprotein endopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MRILAIESSAVTASVAILEDDTLVVEYTINHKMTHSQTLLPMIDDIFSMVQLKPDDVDVIAVSKGPGSFTGLRIGAATGK
GIALALDKKMVAVPTLAAMAYNLYGDSRYICPVMDARRKHLYSGIYTFDGDRLITVRDVNLESYDELAEELAGLDRQVVL
VGDGVDVAGDVLKEQLGDKCVLAPAHIKTQRAGSVALLAKQMADNGEYTDADELKPDYLRPSQAEREKAQHES

Sequences:

>Translated_233_residues
MRILAIESSAVTASVAILEDDTLVVEYTINHKMTHSQTLLPMIDDIFSMVQLKPDDVDVIAVSKGPGSFTGLRIGAATGK
GIALALDKKMVAVPTLAAMAYNLYGDSRYICPVMDARRKHLYSGIYTFDGDRLITVRDVNLESYDELAEELAGLDRQVVL
VGDGVDVAGDVLKEQLGDKCVLAPAHIKTQRAGSVALLAKQMADNGEYTDADELKPDYLRPSQAEREKAQHES
>Mature_233_residues
MRILAIESSAVTASVAILEDDTLVVEYTINHKMTHSQTLLPMIDDIFSMVQLKPDDVDVIAVSKGPGSFTGLRIGAATGK
GIALALDKKMVAVPTLAAMAYNLYGDSRYICPVMDARRKHLYSGIYTFDGDRLITVRDVNLESYDELAEELAGLDRQVVL
VGDGVDVAGDVLKEQLGDKCVLAPAHIKTQRAGSVALLAKQMADNGEYTDADELKPDYLRPSQAEREKAQHES

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=234, Percent_Identity=31.1965811965812, Blast_Score=97, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 25326; Mature: 25326

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILAIESSAVTASVAILEDDTLVVEYTINHKMTHSQTLLPMIDDIFSMVQLKPDDVDVI
CEEEEEECCCEEEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
AVSKGPGSFTGLRIGAATGKGIALALDKKMVAVPTLAAMAYNLYGDSRYICPVMDARRKH
EEECCCCCCCEEEEECCCCCCEEEEECCCEEHHHHHHHHHHHHCCCCEEEECHHHHHHHH
LYSGIYTFDGDRLITVRDVNLESYDELAEELAGLDRQVVLVGDGVDVAGDVLKEQLGDKC
HHHCEEEECCCEEEEEEECCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEE
VLAPAHIKTQRAGSVALLAKQMADNGEYTDADELKPDYLRPSQAEREKAQHES
EEECCHHCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MRILAIESSAVTASVAILEDDTLVVEYTINHKMTHSQTLLPMIDDIFSMVQLKPDDVDVI
CEEEEEECCCEEEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
AVSKGPGSFTGLRIGAATGKGIALALDKKMVAVPTLAAMAYNLYGDSRYICPVMDARRKH
EEECCCCCCCEEEEECCCCCCEEEEECCCEEHHHHHHHHHHHHCCCCEEEECHHHHHHHH
LYSGIYTFDGDRLITVRDVNLESYDELAEELAGLDRQVVLVGDGVDVAGDVLKEQLGDKC
HHHCEEEECCCEEEEEEECCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEE
VLAPAHIKTQRAGSVALLAKQMADNGEYTDADELKPDYLRPSQAEREKAQHES
EEECCHHCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]