Click here to switch to the map view.

The map label for this gene is ydiB [H]

Identifier: 238916341

GI number: 238916341

Start: 406819

End: 407250

Strand: Direct

Name: ydiB [H]

Synonym: EUBELI_00375

Alternate gene names: 238916341

Gene position: 406819-407250 (Clockwise)

Preceding gene: 238916340

Following gene: 238916342

Centisome position: 18.97

GC content: 39.35

Gene sequence:

>432_bases
ATGGTTAAAGAAACATTTAACGCTAAAGAAACATTTGAAGCAGGATATGAGATGGGTAAGAAGGCTCTTCCGGGGCAGAT
ATACTGTCTAAATGGAGATTTAGGTGTCGGAAAAACAGTATTTACGCAGGGCTTTGCGAAAGGTCTTGGAATAGAAGAGC
CTGTCAACAGCCCTACATTTACAATTATTCAGGAATACCATGAAGGCAGACTGCCATTGTATCATTTTGATGTATACAGA
ATTGGCGATGTTGAAGAGATGGATGAGCTTGGATATGAGGAATATTTCTATTCAGACGGGGTGTGCCTTATTGAATGGAG
CACACTTATACAGGAGATAATTCCAGATAATGCGATAGAGATAGTTATAGAAAAAGACCTTGAAAAAGGCTTTGATTACA
GGAAAATAACTATCGGGCAGGAGGCAGTATGA

Upstream 100 bases:

>100_bases
TTTGTTAAAATGTGTCAGAAGAAATTAAAGTCTTTTCAGGTTAAGGTTAATATGGATAAGCTTGCTAAGGCTGTAGCTTA
AGTAAGCAGATAGGAATAAT

Downstream 100 bases:

>100_bases
GAATATTAGCGATAGAAAGTTCAGCAGTTACAGCATCAGTTGCGATTCTTGAAGATGATACACTTGTTGTTGAATACACA
ATTAATCATAAGATGACACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MVKETFNAKETFEAGYEMGKKALPGQIYCLNGDLGVGKTVFTQGFAKGLGIEEPVNSPTFTIIQEYHEGRLPLYHFDVYR
IGDVEEMDELGYEEYFYSDGVCLIEWSTLIQEIIPDNAIEIVIEKDLEKGFDYRKITIGQEAV

Sequences:

>Translated_143_residues
MVKETFNAKETFEAGYEMGKKALPGQIYCLNGDLGVGKTVFTQGFAKGLGIEEPVNSPTFTIIQEYHEGRLPLYHFDVYR
IGDVEEMDELGYEEYFYSDGVCLIEWSTLIQEIIPDNAIEIVIEKDLEKGFDYRKITIGQEAV
>Mature_143_residues
MVKETFNAKETFEAGYEMGKKALPGQIYCLNGDLGVGKTVFTQGFAKGLGIEEPVNSPTFTIIQEYHEGRLPLYHFDVYR
IGDVEEMDELGYEEYFYSDGVCLIEWSTLIQEIIPDNAIEIVIEKDLEKGFDYRKITIGQEAV

Specific function: Displays ATPase activity, which is modulated by the oligomeric status of the protein. The physiological partner is unknown [H]

COG id: COG0802

COG function: function code R; Predicted ATPase or kinase

Gene ontology:

Cell location: Cytoplasm. Note=Localized predominantly at the cell poles and at the periphery of the bacterium [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0079 family [H]

Homologues:

Organism=Escherichia coli, GI1790610, Length=116, Percent_Identity=38.7931034482759, Blast_Score=98, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003442 [H]

Pfam domain/function: PF02367 UPF0079 [H]

EC number: NA

Molecular weight: Translated: 16264; Mature: 16264

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKETFNAKETFEAGYEMGKKALPGQIYCLNGDLGVGKTVFTQGFAKGLGIEEPVNSPTF
CCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCHH
TIIQEYHEGRLPLYHFDVYRIGDVEEMDELGYEEYFYSDGVCLIEWSTLIQEIIPDNAIE
HHHHHHHCCCCCEEEECEEEECCHHHHHHCCHHHHHCCCCEEEEEHHHHHHHHCCCCCEE
IVIEKDLEKGFDYRKITIGQEAV
EEEECHHHCCCCEEEEECCCCCC
>Mature Secondary Structure
MVKETFNAKETFEAGYEMGKKALPGQIYCLNGDLGVGKTVFTQGFAKGLGIEEPVNSPTF
CCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCHH
TIIQEYHEGRLPLYHFDVYRIGDVEEMDELGYEEYFYSDGVCLIEWSTLIQEIIPDNAIE
HHHHHHHCCCCCEEEECEEEECCHHHHHHCCHHHHHCCCCEEEEEHHHHHHHHCCCCCEE
IVIEKDLEKGFDYRKITIGQEAV
EEEECHHHCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]