Click here to switch to the map view.

The map label for this gene is rhaR [H]

Identifier: 238916302

GI number: 238916302

Start: 357969

End: 358790

Strand: Reverse

Name: rhaR [H]

Synonym: EUBELI_00336

Alternate gene names: 238916302

Gene position: 358790-357969 (Counterclockwise)

Preceding gene: 238916307

Following gene: 238916301

Centisome position: 16.73

GC content: 35.77

Gene sequence:

>822_bases
ATGTACCATTTTATTAATGACAATTTCCTCACGGATATTGCTACTGTGCCACCATCTTATAAGATGAAACATTTTCATGA
ACATAACAAATGGGAGTTGATGTTTATATATTCTGGTTCCTGCACCCTTTATGTAGGTGATGAAATATATATGTTAAATC
CGGGCGGACTTGCTCTTATTTCACCAGATACAGCCCATATGACTACTTACCTTGCAGGAAGTGACCATACAAGATATGTG
CTATATTTTAATAATGATGAATTAAAGTGGATTGCTGATGATTCTTCTCTGGATATAGAAAGCATTTTTCATGAACATCC
TGTTATCCATATACCAGAAAGACGACTTGATTATATATCATCAATTATCCAGAAGATTTCTTATGAACACAATGGTGTAG
ATAGTCTGTCTTTATCTTTCATACATTCTTATTTTCATGAACTTATACTTTTTATTCTGCGTTGTCAGATGTACGAAGAT
AATGTTATTACGAAAATGGATACAGGTAATGAACTTATCCAGAAGGTTATTGAATATATTATCGAGAATTATCATAATGA
CATAACTATGGCTGCTACCGCCGAACTTTTTAATATGAGTGAATCGAGCCTTTCCAAGAAATTTAAGGCTTTTACAGGCT
TCAGGTTCAGAGAGTATCTTATTAATGTAAGAACGCACGCAGCAGCAGACCTTTTAGTCAACACCAGCCTCTCTATTACT
GAGATTGCTGACAAATGCGGTTTCGCCGACAGTAATACTATGGGCGGAACATTTAAAAAAATCATGGGCGAAGCGCCCGG
AAGCTACAGAAAGAGCCACTAA

Upstream 100 bases:

>100_bases
AAAATATGTAAAAAATCAGTAACATTTTCTCTATAAACAACCTATAATCAGTATATGATTTTGCTTCGTAAGATATTATT
TATATACCTAGGAGACGGCA

Downstream 100 bases:

>100_bases
TTATTTTTTTATTTTAGAATGGAGGTTATTATGGCAGATTTTATTTTACTTGATGAAGATTTCTCTGATTTTCCTATTGG
TGAATTTCCTTATGATAAGA

Product: xylan 1,4-beta-xylosidase

Products: NA

Alternate protein names: L-rhamnose operon transcriptional activator rhaR [H]

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MYHFINDNFLTDIATVPPSYKMKHFHEHNKWELMFIYSGSCTLYVGDEIYMLNPGGLALISPDTAHMTTYLAGSDHTRYV
LYFNNDELKWIADDSSLDIESIFHEHPVIHIPERRLDYISSIIQKISYEHNGVDSLSLSFIHSYFHELILFILRCQMYED
NVITKMDTGNELIQKVIEYIIENYHNDITMAATAELFNMSESSLSKKFKAFTGFRFREYLINVRTHAAADLLVNTSLSIT
EIADKCGFADSNTMGGTFKKIMGEAPGSYRKSH

Sequences:

>Translated_273_residues
MYHFINDNFLTDIATVPPSYKMKHFHEHNKWELMFIYSGSCTLYVGDEIYMLNPGGLALISPDTAHMTTYLAGSDHTRYV
LYFNNDELKWIADDSSLDIESIFHEHPVIHIPERRLDYISSIIQKISYEHNGVDSLSLSFIHSYFHELILFILRCQMYED
NVITKMDTGNELIQKVIEYIIENYHNDITMAATAELFNMSESSLSKKFKAFTGFRFREYLINVRTHAAADLLVNTSLSIT
EIADKCGFADSNTMGGTFKKIMGEAPGSYRKSH
>Mature_273_residues
MYHFINDNFLTDIATVPPSYKMKHFHEHNKWELMFIYSGSCTLYVGDEIYMLNPGGLALISPDTAHMTTYLAGSDHTRYV
LYFNNDELKWIADDSSLDIESIFHEHPVIHIPERRLDYISSIIQKISYEHNGVDSLSLSFIHSYFHELILFILRCQMYED
NVITKMDTGNELIQKVIEYIIENYHNDITMAATAELFNMSESSLSKKFKAFTGFRFREYLINVRTHAAADLLVNTSLSIT
EIADKCGFADSNTMGGTFKKIMGEAPGSYRKSH

Specific function: Activates expression of the rhaSR operon in response to L-rhamnose [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1788725, Length=153, Percent_Identity=28.7581699346405, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790391, Length=119, Percent_Identity=30.2521008403361, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31433; Mature: 31433

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYHFINDNFLTDIATVPPSYKMKHFHEHNKWELMFIYSGSCTLYVGDEIYMLNPGGLALI
CCEEECCCHHHHHHCCCCCCHHHHHCCCCCEEEEEEEECCEEEEECCEEEEECCCCEEEE
SPDTAHMTTYLAGSDHTRYVLYFNNDELKWIADDSSLDIESIFHEHPVIHIPERRLDYIS
CCCCHHEEEEEECCCCEEEEEEEECCCEEEEECCCCCCHHHHHHCCCEEECCHHHHHHHH
SIIQKISYEHNGVDSLSLSFIHSYFHELILFILRCQMYEDNVITKMDTGNELIQKVIEYI
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH
IENYHNDITMAATAELFNMSESSLSKKFKAFTGFRFREYLINVRTHAAADLLVNTSLSIT
HHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHEECCCHHH
EIADKCGFADSNTMGGTFKKIMGEAPGSYRKSH
HHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MYHFINDNFLTDIATVPPSYKMKHFHEHNKWELMFIYSGSCTLYVGDEIYMLNPGGLALI
CCEEECCCHHHHHHCCCCCCHHHHHCCCCCEEEEEEEECCEEEEECCEEEEECCCCEEEE
SPDTAHMTTYLAGSDHTRYVLYFNNDELKWIADDSSLDIESIFHEHPVIHIPERRLDYIS
CCCCHHEEEEEECCCCEEEEEEEECCCEEEEECCCCCCHHHHHHCCCEEECCHHHHHHHH
SIIQKISYEHNGVDSLSLSFIHSYFHELILFILRCQMYEDNVITKMDTGNELIQKVIEYI
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH
IENYHNDITMAATAELFNMSESSLSKKFKAFTGFRFREYLINVRTHAAADLLVNTSLSIT
HHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHEECCCHHH
EIADKCGFADSNTMGGTFKKIMGEAPGSYRKSH
HHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA