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The map label for this gene is csrA

Identifier: 238916202

GI number: 238916202

Start: 262435

End: 262656

Strand: Direct

Name: csrA

Synonym: EUBELI_00236

Alternate gene names: 238916202

Gene position: 262435-262656 (Clockwise)

Preceding gene: 238916201

Following gene: 238916203

Centisome position: 12.24

GC content: 36.49

Gene sequence:

>222_bases
ATGCTCGCATTATCAAGAAAGAAAGACGAAGCAATCATTATTAATGATGATATTGAGATTACAATAATCGAAATCAAGGG
CGACCAGGTAAAGCTTGGCATATCAGCTCCGAAGTCAGTACCTATATATCGTAAGGAAGTGTATGCACAGATACTTGATT
CTAATAAGGAAGCAGCAAGTTCGGTTGATGTGAAGACTCTTAACCAGTTATTTAAGAAATGA

Upstream 100 bases:

>100_bases
GATTTTGATACGATGAAGGGAATACAGCTTATAGCAGATAATTCTGAATATCAGGTAAGATATCCTATATACGATATTCT
AAAGAAGGAGGAGAACTAAT

Downstream 100 bases:

>100_bases
TTTGTTTTATTTGTGTATATTTTTGTCCAAAGGGTTAAATTTTACTTAACATTTTCCGATATATGCAGTACAACATGAAT
GTAACTACAGGATAAAGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MLALSRKKDEAIIINDDIEITIIEIKGDQVKLGISAPKSVPIYRKEVYAQILDSNKEAASSVDVKTLNQLFKK

Sequences:

>Translated_73_residues
MLALSRKKDEAIIINDDIEITIIEIKGDQVKLGISAPKSVPIYRKEVYAQILDSNKEAASSVDVKTLNQLFKK
>Mature_73_residues
MLALSRKKDEAIIINDDIEITIIEIKGDQVKLGISAPKSVPIYRKEVYAQILDSNKEAASSVDVKTLNQLFKK

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_EUBE2 (C4Z282)

Other databases:

- EMBL:   CP001104
- RefSeq:   YP_002929719.1
- GeneID:   7956970
- GenomeReviews:   CP001104_GR
- KEGG:   eel:EUBELI_00236
- OMA:   SVCVDES
- ProtClustDB:   CLSK2548220
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 8159; Mature: 8159

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLALSRKKDEAIIINDDIEITIIEIKGDQVKLGISAPKSVPIYRKEVYAQILDSNKEAAS
CCCCCCCCCCEEEECCCCEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCC
SVDVKTLNQLFKK
CCCHHHHHHHHCC
>Mature Secondary Structure
MLALSRKKDEAIIINDDIEITIIEIKGDQVKLGISAPKSVPIYRKEVYAQILDSNKEAAS
CCCCCCCCCCEEEECCCCEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCC
SVDVKTLNQLFKK
CCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA