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The map label for this gene is int [H]

Identifier: 238916181

GI number: 238916181

Start: 242460

End: 243146

Strand: Direct

Name: int [H]

Synonym: EUBELI_00215

Alternate gene names: 238916181

Gene position: 242460-243146 (Clockwise)

Preceding gene: 238916179

Following gene: 238916182

Centisome position: 11.31

GC content: 36.54

Gene sequence:

>687_bases
ATGCGAAAATTCTTAAAATTTATACATGTTGATGTGGTTTATTGTAAATATTATGAAGAGATTTATATTTTTTTTCACAC
TGGTATGAGAATTTCGGAATTTTGTGGACTTACGATGATGGATATTGATTTAGAGAAAAGAACAATCAATATTGATCATC
AGCTGCAAAGAACTTCCAAAAGAGAGTATGTAATTGAGCCAACAAAAACCAATGCCGGAACAAGGGTTATTCCAATGACA
AATGAAGTGACAGAAATGTTTCGAGCAATTATTGAGGATAGACCAGATTATAAGGTTGAGAAAGTGATAGATGGTTATAC
GGGATTTCTTTTTCTGGACAAAGATGGAATGCCACTTGTATCCATGCATTGGGAACACAGATTCAATCATATGGTCAGCA
GGTACAATGAAATCTATAAGGTTCAGATGCCCAATATTACCCCTCATGTTTGCAGACATACATATTGTTCCAATATGGCA
AAGTCCGGCATGAATCCTAAAACACTGCAGTATTTGATGGTACATTCGGATATAGCTGTGACGCTCAATGTCTACACCCA
TGTAGGACTTGAGGATGCTGAGAAGGAACTTCAGAAGATGCAGGGATTGGAAAATGCCAGAAAAGAGATGGGAATTTCGG
ATACGGATGATAAACCTTTGAAACAGAATATGTTCAAGGTGGTATGA

Upstream 100 bases:

>100_bases
GTGCATGATGACGTTTTTATGAAAAATCCCTTCCAAATTTTAATTAGCCGGAGTAGTAGCCAATGATGCTGTTACAAGAG
AAGTAATTACAAAAGACCAG

Downstream 100 bases:

>100_bases
TAATATAATAAGGAAAAAATATAAAAAGCACTCAGCCTGTTTGGGTTGAGTGCTTTTTATATGGTGTGAATTCAGCTGGT
ATGGTAGAATAATTTTGTTA

Product: integrase/recombinase XerD

Products: NA

Alternate protein names: Integrase [H]

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MRKFLKFIHVDVVYCKYYEEIYIFFHTGMRISEFCGLTMMDIDLEKRTINIDHQLQRTSKREYVIEPTKTNAGTRVIPMT
NEVTEMFRAIIEDRPDYKVEKVIDGYTGFLFLDKDGMPLVSMHWEHRFNHMVSRYNEIYKVQMPNITPHVCRHTYCSNMA
KSGMNPKTLQYLMVHSDIAVTLNVYTHVGLEDAEKELQKMQGLENARKEMGISDTDDKPLKQNMFKVV

Sequences:

>Translated_228_residues
MRKFLKFIHVDVVYCKYYEEIYIFFHTGMRISEFCGLTMMDIDLEKRTINIDHQLQRTSKREYVIEPTKTNAGTRVIPMT
NEVTEMFRAIIEDRPDYKVEKVIDGYTGFLFLDKDGMPLVSMHWEHRFNHMVSRYNEIYKVQMPNITPHVCRHTYCSNMA
KSGMNPKTLQYLMVHSDIAVTLNVYTHVGLEDAEKELQKMQGLENARKEMGISDTDDKPLKQNMFKVV
>Mature_228_residues
MRKFLKFIHVDVVYCKYYEEIYIFFHTGMRISEFCGLTMMDIDLEKRTINIDHQLQRTSKREYVIEPTKTNAGTRVIPMT
NEVTEMFRAIIEDRPDYKVEKVIDGYTGFLFLDKDGMPLVSMHWEHRFNHMVSRYNEIYKVQMPNITPHVCRHTYCSNMA
KSGMNPKTLQYLMVHSDIAVTLNVYTHVGLEDAEKELQKMQGLENARKEMGISDTDDKPLKQNMFKVV

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=171, Percent_Identity=25.7309941520468, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016177
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004191
- InterPro:   IPR013087 [H]

Pfam domain/function: PF02920 Integrase_DNA; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 26925; Mature: 26925

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
7.0 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
7.0 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKFLKFIHVDVVYCKYYEEIYIFFHTGMRISEFCGLTMMDIDLEKRTINIDHQLQRTSK
CHHHHHHHHHHHHHEEHHHEEEEEEECCCCHHHHCCCEEEEEECCCEEECCHHHHHHCCC
REYVIEPTKTNAGTRVIPMTNEVTEMFRAIIEDRPDYKVEKVIDGYTGFLFLDKDGMPLV
CCEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEEECCCCCCEE
SMHWEHRFNHMVSRYNEIYKVQMPNITPHVCRHTYCSNMAKSGMNPKTLQYLMVHSDIAV
HHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHEEEEEECCEEE
TLNVYTHVGLEDAEKELQKMQGLENARKEMGISDTDDKPLKQNMFKVV
EEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MRKFLKFIHVDVVYCKYYEEIYIFFHTGMRISEFCGLTMMDIDLEKRTINIDHQLQRTSK
CHHHHHHHHHHHHHEEHHHEEEEEEECCCCHHHHCCCEEEEEECCCEEECCHHHHHHCCC
REYVIEPTKTNAGTRVIPMTNEVTEMFRAIIEDRPDYKVEKVIDGYTGFLFLDKDGMPLV
CCEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEEECCCCCCEE
SMHWEHRFNHMVSRYNEIYKVQMPNITPHVCRHTYCSNMAKSGMNPKTLQYLMVHSDIAV
HHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHEEEEEECCEEE
TLNVYTHVGLEDAEKELQKMQGLENARKEMGISDTDDKPLKQNMFKVV
EEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12200547 [H]