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The map label for this gene is yddM [C]

Identifier: 238916176

GI number: 238916176

Start: 237768

End: 238820

Strand: Direct

Name: yddM [C]

Synonym: EUBELI_00210

Alternate gene names: 238916176

Gene position: 237768-238820 (Clockwise)

Preceding gene: 238916175

Following gene: 238916177

Centisome position: 11.09

GC content: 36.37

Gene sequence:

>1053_bases
ATGGTGAGAAGTCGCAGTATAATTGCAACGCCACCAGGAGCAACAATAAAAGAACAGCTTAACGACAGGGGGATGAGTCA
GAAAGAGTTTGCTGTAAGAATTGATATGACAGAGAAACATGTCAGCAAACTCATTAATGGAGAGGTTCAGTTGACACCTG
AGGTGGCTGTTAGATTGGAAATAGTGCTTGGCGTGCCAGCAAGGTTTTGGAATAATTTGGAGGCAATATATAGAGAAAAA
CTTATAAAGATTGCAGCGGAAAAGGCTATGGATGCGGATGAGAATTTGGCTAGACAATTTCCATATAGTGAGATGGCTAA
GTTAGGCTGGATACCACAAACAAGGAATTCTAAGGAAAAAGTTATTAATCTTAGAAAGTATTTTGAAGTGGTTAGTTTAT
CATTGTTAGAGAATACACAGATTACAAGAATTGCATGCAGAAGACTTGCAGTGACAGATAAGAGTGATTTGGCTTTGCTA
GCATGGACACAGGAAGCTAAAATTCAGGCACGTGGCATAGAAACGAAACCAATTAATATTAAGGGTCTTATAAGTGTTAT
GCCAGATATAAGAAAGATGACTTTAAAAAAACCAAAAGATTTTTGCTTTGAGCTTAAATCATTGCTTGCAGAAAATGGAG
TTGCATTGGTATTTTTACCACATTTGAAAGGTTCATTTTTACAAGGCGCTACATTTATAGATGGGAATAAGATTGTTGTT
GGATTAACAGCAAGAGGCAAGGATGCAGATAAATTCTGGTTTAGTCTGTTCCATGAACTTGGACATATTATTCTTGGGCA
TGTGGGGAAAAATGGTGGAACAACAGAACAGGATGAACAGGATGCAGATGTATGGTCAAGAGATGAATTGATTCCATTAG
AGACATTTAAAATGTTTAAAGAAGAACAGAATTTTTCGGTTGCAAGTGTAAAAAGATTTGCAAAAGAGAATAGAATTGCT
CCGGGAATTGTTGTTGGACGATTACAGAATGAAGGCTGTATTGAGTACAATATGTTAAATGAATTGAAGGAACATTATGT
AATTACTGTATAA

Upstream 100 bases:

>100_bases
CAAGAAAATTAAGAATATTTGTATGGATGCTAAAGCTGCCGATAGAACCTATGGAAATAGTGGATTATCATTAGTTGGAA
TATGAATAGGAGGTAGCAAA

Downstream 100 bases:

>100_bases
GAATTTACATAAGGAGGATTTTCATGAGCAATATTATTGTTTTGTCAGGCAGCCCGCGTAAGGGTGGCAATACTGACCTG
TTGGTTGACGCATTTGTTAA

Product: hypothetical protein

Products: NA

Alternate protein names: XRE Family Plasmid Maintenance System Antidote Protein; Plasmid Maintenance System Antidote Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; HTH-Type Transcriptional Regulator; Transcription Regulator With HTH Domain Protein; Addiction Module Antidote Protein HigA Family; Virulence-Associated Protein I; Plasmid Maintenance System Antidote Protein Xre Family; Addiction Module Antidote Protein

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MVRSRSIIATPPGATIKEQLNDRGMSQKEFAVRIDMTEKHVSKLINGEVQLTPEVAVRLEIVLGVPARFWNNLEAIYREK
LIKIAAEKAMDADENLARQFPYSEMAKLGWIPQTRNSKEKVINLRKYFEVVSLSLLENTQITRIACRRLAVTDKSDLALL
AWTQEAKIQARGIETKPINIKGLISVMPDIRKMTLKKPKDFCFELKSLLAENGVALVFLPHLKGSFLQGATFIDGNKIVV
GLTARGKDADKFWFSLFHELGHIILGHVGKNGGTTEQDEQDADVWSRDELIPLETFKMFKEEQNFSVASVKRFAKENRIA
PGIVVGRLQNEGCIEYNMLNELKEHYVITV

Sequences:

>Translated_350_residues
MVRSRSIIATPPGATIKEQLNDRGMSQKEFAVRIDMTEKHVSKLINGEVQLTPEVAVRLEIVLGVPARFWNNLEAIYREK
LIKIAAEKAMDADENLARQFPYSEMAKLGWIPQTRNSKEKVINLRKYFEVVSLSLLENTQITRIACRRLAVTDKSDLALL
AWTQEAKIQARGIETKPINIKGLISVMPDIRKMTLKKPKDFCFELKSLLAENGVALVFLPHLKGSFLQGATFIDGNKIVV
GLTARGKDADKFWFSLFHELGHIILGHVGKNGGTTEQDEQDADVWSRDELIPLETFKMFKEEQNFSVASVKRFAKENRIA
PGIVVGRLQNEGCIEYNMLNELKEHYVITV
>Mature_350_residues
MVRSRSIIATPPGATIKEQLNDRGMSQKEFAVRIDMTEKHVSKLINGEVQLTPEVAVRLEIVLGVPARFWNNLEAIYREK
LIKIAAEKAMDADENLARQFPYSEMAKLGWIPQTRNSKEKVINLRKYFEVVSLSLLENTQITRIACRRLAVTDKSDLALL
AWTQEAKIQARGIETKPINIKGLISVMPDIRKMTLKKPKDFCFELKSLLAENGVALVFLPHLKGSFLQGATFIDGNKIVV
GLTARGKDADKFWFSLFHELGHIILGHVGKNGGTTEQDEQDADVWSRDELIPLETFKMFKEEQNFSVASVKRFAKENRIA
PGIVVGRLQNEGCIEYNMLNELKEHYVITV

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39610; Mature: 39610

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: PS50943 HTH_CROC1 ; PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRSRSIIATPPGATIKEQLNDRGMSQKEFAVRIDMTEKHVSKLINGEVQLTPEVAVRLE
CCCCCCEEECCCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCEEECHHHEEEEE
IVLGVPARFWNNLEAIYREKLIKIAAEKAMDADENLARQFPYSEMAKLGWIPQTRNSKEK
EEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHCCCCCCCCCHHH
VINLRKYFEVVSLSLLENTQITRIACRRLAVTDKSDLALLAWTQEAKIQARGIETKPINI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCH
KGLISVMPDIRKMTLKKPKDFCFELKSLLAENGVALVFLPHLKGSFLQGATFIDGNKIVV
HHHHHHCCHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHCCCEEECCCEEEE
GLTARGKDADKFWFSLFHELGHIILGHVGKNGGTTEQDEQDADVWSRDELIPLETFKMFK
EEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
EEQNFSVASVKRFAKENRIAPGIVVGRLQNEGCIEYNMLNELKEHYVITV
HHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCEEHHHHHHHHHCEEEEC
>Mature Secondary Structure
MVRSRSIIATPPGATIKEQLNDRGMSQKEFAVRIDMTEKHVSKLINGEVQLTPEVAVRLE
CCCCCCEEECCCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCEEECHHHEEEEE
IVLGVPARFWNNLEAIYREKLIKIAAEKAMDADENLARQFPYSEMAKLGWIPQTRNSKEK
EEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHCCCCCCCCCHHH
VINLRKYFEVVSLSLLENTQITRIACRRLAVTDKSDLALLAWTQEAKIQARGIETKPINI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCH
KGLISVMPDIRKMTLKKPKDFCFELKSLLAENGVALVFLPHLKGSFLQGATFIDGNKIVV
HHHHHHCCHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHCCCEEECCCEEEE
GLTARGKDADKFWFSLFHELGHIILGHVGKNGGTTEQDEQDADVWSRDELIPLETFKMFK
EEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
EEQNFSVASVKRFAKENRIAPGIVVGRLQNEGCIEYNMLNELKEHYVITV
HHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCEEHHHHHHHHHCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA