Click here to switch to the map view.

The map label for this gene is ybfF [C]

Identifier: 238916069

GI number: 238916069

Start: 113154

End: 113876

Strand: Direct

Name: ybfF [C]

Synonym: EUBELI_00102

Alternate gene names: 238916069

Gene position: 113154-113876 (Clockwise)

Preceding gene: 238916068

Following gene: 238916070

Centisome position: 5.28

GC content: 36.51

Gene sequence:

>723_bases
ATGGACAATTATGGAGAAAATATGAAAAAACTTATAATAATTCCAGCATATAACGAGAGCGAAAGTATAGAGAAGACAGT
CAGAGATATTATAGAGAATGCACCATCATTTGATTATGTAGTTATCAACGACTGCTCAACTGATAATACACGACAGATAT
GTGAAGATAATGGATTTAATATTGTTAATCTGCCAGTTAATCTGGGAATAGGCGGAGCTGTTCAGACAGGATATCTGTAT
GCAGAAAGATATGGATATGATATTGCTGTACAGGTAGATGGTGATGGACAGCATGATGCGAAATTCCTTGGAGAGATGGC
TGATTATCTTGAAAAGAATGACCTTGATATGGTTATAGGTTCAAGATTCATAGAAAAACAGGGATTCCAGTCATCTAAGG
CAAGACGAATTGGAATTAACTATTTCACTGGCTTGATAAAGTTATGTACAGGTCAGAAGATAACAGACCCTACATCAGGA
TTAAGACTTATAGGAAGACGTACAATAGTACAGTTTGCCAAGAAGTATCCTAAGGATTATCCAGAGCCGGAAACAGTTGT
GGCAATATTAAAGAAAGGTTTCAAGGTGGCTGAGATTCCAGTTGTCATGAGAGAAAGACAGGGCGGAAGCTCATCAATAA
CACTTAAGAAATCAGTATATTATATGGTTAAGGTTACACTGGCAATATTGTTTGAGAATTTCAGAGGAGATAAGCATAGA
TGA

Upstream 100 bases:

>100_bases
TATGAAGATGCCACCAGTAGAGAGCAGAAAGAATCATGTACCTGAGGTTCTGGAGTTCGGACCATTTGATGAGGAACTGA
AAGATATTGATATTTAAAGC

Downstream 100 bases:

>100_bases
GTATAAGAATTAAATGCGTTATAATTGTTGTTCTTATATTAGGACTGTTAAAGATATTAGGTCTTATCAAGAAGAACAAA
CTGGAATTAAAATATGCACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MDNYGENMKKLIIIPAYNESESIEKTVRDIIENAPSFDYVVINDCSTDNTRQICEDNGFNIVNLPVNLGIGGAVQTGYLY
AERYGYDIAVQVDGDGQHDAKFLGEMADYLEKNDLDMVIGSRFIEKQGFQSSKARRIGINYFTGLIKLCTGQKITDPTSG
LRLIGRRTIVQFAKKYPKDYPEPETVVAILKKGFKVAEIPVVMRERQGGSSSITLKKSVYYMVKVTLAILFENFRGDKHR

Sequences:

>Translated_240_residues
MDNYGENMKKLIIIPAYNESESIEKTVRDIIENAPSFDYVVINDCSTDNTRQICEDNGFNIVNLPVNLGIGGAVQTGYLY
AERYGYDIAVQVDGDGQHDAKFLGEMADYLEKNDLDMVIGSRFIEKQGFQSSKARRIGINYFTGLIKLCTGQKITDPTSG
LRLIGRRTIVQFAKKYPKDYPEPETVVAILKKGFKVAEIPVVMRERQGGSSSITLKKSVYYMVKVTLAILFENFRGDKHR
>Mature_240_residues
MDNYGENMKKLIIIPAYNESESIEKTVRDIIENAPSFDYVVINDCSTDNTRQICEDNGFNIVNLPVNLGIGGAVQTGYLY
AERYGYDIAVQVDGDGQHDAKFLGEMADYLEKNDLDMVIGSRFIEKQGFQSSKARRIGINYFTGLIKLCTGQKITDPTSG
LRLIGRRTIVQFAKKYPKDYPEPETVVAILKKGFKVAEIPVVMRERQGGSSSITLKKSVYYMVKVTLAILFENFRGDKHR

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI71999402, Length=226, Percent_Identity=26.5486725663717, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 27033; Mature: 27033

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNYGENMKKLIIIPAYNESESIEKTVRDIIENAPSFDYVVINDCSTDNTRQICEDNGFN
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCCCE
IVNLPVNLGIGGAVQTGYLYAERYGYDIAVQVDGDGQHDAKFLGEMADYLEKNDLDMVIG
EEEEEEECCCCCCHHHCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHH
SRFIEKQGFQSSKARRIGINYFTGLIKLCTGQKITDPTSGLRLIGRRTIVQFAKKYPKDY
HHHHHHCCCCCCCCCEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
PEPETVVAILKKGFKVAEIPVVMRERQGGSSSITLKKSVYYMVKVTLAILFENFRGDKHR
CCHHHHHHHHHCCCEEEECHHEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDNYGENMKKLIIIPAYNESESIEKTVRDIIENAPSFDYVVINDCSTDNTRQICEDNGFN
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCCCE
IVNLPVNLGIGGAVQTGYLYAERYGYDIAVQVDGDGQHDAKFLGEMADYLEKNDLDMVIG
EEEEEEECCCCCCHHHCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHH
SRFIEKQGFQSSKARRIGINYFTGLIKLCTGQKITDPTSGLRLIGRRTIVQFAKKYPKDY
HHHHHHCCCCCCCCCEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
PEPETVVAILKKGFKVAEIPVVMRERQGGSSSITLKKSVYYMVKVTLAILFENFRGDKHR
CCHHHHHHHHHCCCEEEECHHEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]