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The map label for this gene is rfbC [H]

Identifier: 238916063

GI number: 238916063

Start: 106187

End: 108181

Strand: Direct

Name: rfbC [H]

Synonym: EUBELI_00096

Alternate gene names: 238916063

Gene position: 106187-108181 (Clockwise)

Preceding gene: 238916062

Following gene: 238916064

Centisome position: 4.95

GC content: 36.84

Gene sequence:

>1995_bases
ATGTTTTTAACGAGAGCAGCACAGATTATTGGAAAAGAAGGCTTTAAGACATTCGGGTATGCATTACAACAGAAGATGCA
TCAGAATATGACAGATGAGAAAGCTTATAGCATTTATCAAAAAAAAATCGCACCAAAACAGCGTATTACTGATAATAAGG
CTGACTGCACAGCAATATGCAGACATAGTGGAAGCTATGAAAGCATGCTGGCAGCAGTGTCTGGAATGGATGCTGAATAT
ATAGCCGTGTGTGATGAAAGCTGTGAATTCGATAAAGATTATACAGCAATTGTTTCACATTATATAAGGATTCAGAAAAG
GGCAGGACGCAGTCTTATATATATATATACTGATTCGGAAAAGTATAATCAGGAAGCTGGATGCGGACTTCCTGACTGCA
AGCCTGATTATTCATGGGATACACTGTTATCTTACAATTATATTGGCGATGCATTTGTTGCAAAGAAGAATGCTCTTATA
GATGCTATTAATGAATGTAAGAATCATGGCGCGGTTGATAATATTAATTATTATGAATTGTCTTTAATAATTCTTTCAAA
GTGTAAGACGTCAGATGTTGGGCATATCCATCAAGTGCTTGTTAAGGACATAAGAACTGACAGTAAATCATACAGGACTG
CTGATGACGGAATGGCAGCTTTTAAGAAAATGATTCTGGAAAGTTCAGAAATTAATGTGAACATCGTAGCAGATAAGCAT
GATTCAGCAGTTGAGCATGTGCATTATATTACGAATGAATATGATCTGGTGAGTATAATTATTCCATCAAAGGATAATCC
AGACATATTAAAATGCTGTTTACAGAGTATCCGCAAGTTCACGAAATATATTAATTACGAAATTGTTGTTGTTGATAACG
GAAGTAATGACAGCAACAGAAAAGAGTATGAGAAGCTTGTAGATACATTTGAAGGACAGGCATCATATGTGTATGAAAAG
GCAGATTTTAATTTCTCACATATGTGTAATATTGGAGCAGCTAAAGCAAAAGGTAATCTGTTGCTGTTCCTTAATGATGA
TATTGAAATAATCGGACAGGATTATGAAGACACAGACTGGCTTTCAGTACTTGTCGGACAGGCAAAGCAGGAAAGTACCG
GCGCGGTTGGTGCAAAGCTTCTGTATCCGGACTCATCATATATCCAGCATGTGGGTGTAATTAATTATGAATCAAGCTGT
TTTGCACATCTGTATGCGAAGGCAGTTGATGATGAGAATATCAAGGCTCACAGGAATTACGCTGATTATGACTGCCTGTG
TGTTACAGGAGCATGCTTTATGATTGAGAAGGCTAAATTCGATAAAGCTGGTGGATTTGATGAAGCATTTGAAGTAACAC
ATAATGATGTTGATATATGCCTGACTTTGTATGAACAGGGATATTACAATGTCTTAAGAAATGACGTGGTCCTTTTTCAC
CATGAATCATTCTCAAGAGGTGATGATGAGGTTGATGAAGAAAAGAACAGACGTAATATGCATGCAAGGGATATGACATA
TGAAAAACATCCAAAGCTTGAGAAATATGACCCTTTCTATAGTCCGCTTCTTACGCAGACGGAGAATAACTACAGATTCG
GAGATGAGATATATTCTGTAATATACAGAAAACCTCAGAAAGCTGACAGATTAAGGCCGGCTGCAGGATATATGGAAGTA
TCACCTACAGTTAAGGTGACAGAAACAGGGTATCATGATGATATGCAGCTTAGGGGATTTGCATATAACGGAAATAAAGT
GTATTATAATCCCGTAATTTTTCTGTGGAATGAACAGAATTGTTATAGGATTAAGGTACAGTCAGTATGTGACAGAGTAT
TTCATTTAAGAAAAGGTGTGGATAAGAACATTAACTATGCACCGTTTTTTTGTGGAATAGATACAACGGATATGGAAAGC
GGCACATATAGATGTGCTATCAGAGCTGATGGTAAATATTATGATGCACAGACAGATGTCGTAATTGATGGTTAA

Upstream 100 bases:

>100_bases
GCAGAAAGAATTAGATGAAGGAGATCCTTTCTATAACAGGAATTTCCCTCTTAACACAGAATCATATACACTGGAATTAG
AGTAATTATCAGAGGTAAAA

Downstream 100 bases:

>100_bases
AACAATATGGCAGAACAAGGAGGAATTTATGAAGACTACAGCACTTATTATGGCAGGTGGTAAGGGAGAGCGATTCTGGC
CAAAGAGCCGTGTTAATATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 664; Mature: 664

Protein sequence:

>664_residues
MFLTRAAQIIGKEGFKTFGYALQQKMHQNMTDEKAYSIYQKKIAPKQRITDNKADCTAICRHSGSYESMLAAVSGMDAEY
IAVCDESCEFDKDYTAIVSHYIRIQKRAGRSLIYIYTDSEKYNQEAGCGLPDCKPDYSWDTLLSYNYIGDAFVAKKNALI
DAINECKNHGAVDNINYYELSLIILSKCKTSDVGHIHQVLVKDIRTDSKSYRTADDGMAAFKKMILESSEINVNIVADKH
DSAVEHVHYITNEYDLVSIIIPSKDNPDILKCCLQSIRKFTKYINYEIVVVDNGSNDSNRKEYEKLVDTFEGQASYVYEK
ADFNFSHMCNIGAAKAKGNLLLFLNDDIEIIGQDYEDTDWLSVLVGQAKQESTGAVGAKLLYPDSSYIQHVGVINYESSC
FAHLYAKAVDDENIKAHRNYADYDCLCVTGACFMIEKAKFDKAGGFDEAFEVTHNDVDICLTLYEQGYYNVLRNDVVLFH
HESFSRGDDEVDEEKNRRNMHARDMTYEKHPKLEKYDPFYSPLLTQTENNYRFGDEIYSVIYRKPQKADRLRPAAGYMEV
SPTVKVTETGYHDDMQLRGFAYNGNKVYYNPVIFLWNEQNCYRIKVQSVCDRVFHLRKGVDKNINYAPFFCGIDTTDMES
GTYRCAIRADGKYYDAQTDVVIDG

Sequences:

>Translated_664_residues
MFLTRAAQIIGKEGFKTFGYALQQKMHQNMTDEKAYSIYQKKIAPKQRITDNKADCTAICRHSGSYESMLAAVSGMDAEY
IAVCDESCEFDKDYTAIVSHYIRIQKRAGRSLIYIYTDSEKYNQEAGCGLPDCKPDYSWDTLLSYNYIGDAFVAKKNALI
DAINECKNHGAVDNINYYELSLIILSKCKTSDVGHIHQVLVKDIRTDSKSYRTADDGMAAFKKMILESSEINVNIVADKH
DSAVEHVHYITNEYDLVSIIIPSKDNPDILKCCLQSIRKFTKYINYEIVVVDNGSNDSNRKEYEKLVDTFEGQASYVYEK
ADFNFSHMCNIGAAKAKGNLLLFLNDDIEIIGQDYEDTDWLSVLVGQAKQESTGAVGAKLLYPDSSYIQHVGVINYESSC
FAHLYAKAVDDENIKAHRNYADYDCLCVTGACFMIEKAKFDKAGGFDEAFEVTHNDVDICLTLYEQGYYNVLRNDVVLFH
HESFSRGDDEVDEEKNRRNMHARDMTYEKHPKLEKYDPFYSPLLTQTENNYRFGDEIYSVIYRKPQKADRLRPAAGYMEV
SPTVKVTETGYHDDMQLRGFAYNGNKVYYNPVIFLWNEQNCYRIKVQSVCDRVFHLRKGVDKNINYAPFFCGIDTTDMES
GTYRCAIRADGKYYDAQTDVVIDG
>Mature_664_residues
MFLTRAAQIIGKEGFKTFGYALQQKMHQNMTDEKAYSIYQKKIAPKQRITDNKADCTAICRHSGSYESMLAAVSGMDAEY
IAVCDESCEFDKDYTAIVSHYIRIQKRAGRSLIYIYTDSEKYNQEAGCGLPDCKPDYSWDTLLSYNYIGDAFVAKKNALI
DAINECKNHGAVDNINYYELSLIILSKCKTSDVGHIHQVLVKDIRTDSKSYRTADDGMAAFKKMILESSEINVNIVADKH
DSAVEHVHYITNEYDLVSIIIPSKDNPDILKCCLQSIRKFTKYINYEIVVVDNGSNDSNRKEYEKLVDTFEGQASYVYEK
ADFNFSHMCNIGAAKAKGNLLLFLNDDIEIIGQDYEDTDWLSVLVGQAKQESTGAVGAKLLYPDSSYIQHVGVINYESSC
FAHLYAKAVDDENIKAHRNYADYDCLCVTGACFMIEKAKFDKAGGFDEAFEVTHNDVDICLTLYEQGYYNVLRNDVVLFH
HESFSRGDDEVDEEKNRRNMHARDMTYEKHPKLEKYDPFYSPLLTQTENNYRFGDEIYSVIYRKPQKADRLRPAAGYMEV
SPTVKVTETGYHDDMQLRGFAYNGNKVYYNPVIFLWNEQNCYRIKVQSVCDRVFHLRKGVDKNINYAPFFCGIDTTDMES
GTYRCAIRADGKYYDAQTDVVIDG

Specific function: Involved in O-antigen biosynthesis [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00534 Glycos_transf_1; PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 75879; Mature: 75879

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLTRAAQIIGKEGFKTFGYALQQKMHQNMTDEKAYSIYQKKIAPKQRITDNKADCTAIC
CCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCCCCCCCHHHHH
RHSGSYESMLAAVSGMDAEYIAVCDESCEFDKDYTAIVSHYIRIQKRAGRSLIYIYTDSE
HCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCH
KYNQEAGCGLPDCKPDYSWDTLLSYNYIGDAFVAKKNALIDAINECKNHGAVDNINYYEL
HHCCCCCCCCCCCCCCCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
SLIILSKCKTSDVGHIHQVLVKDIRTDSKSYRTADDGMAAFKKMILESSEINVNIVADKH
EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
DSAVEHVHYITNEYDLVSIIIPSKDNPDILKCCLQSIRKFTKYINYEIVVVDNGSNDSNR
CHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHH
KEYEKLVDTFEGQASYVYEKADFNFSHMCNIGAAKAKGNLLLFLNDDIEIIGQDYEDTDW
HHHHHHHHHHCCCCEEEEEECCCCHHHHCCCCCCCCCCCEEEEECCCEEEECCCCCCHHH
LSVLVGQAKQESTGAVGAKLLYPDSSYIQHVGVINYESSCFAHLYAKAVDDENIKAHRNY
HHHHHCCCCCCCCCCCCEEEECCCHHHHHHEEEEEECCHHHHHHHHHHCCCCCCEECCCC
ADYDCLCVTGACFMIEKAKFDKAGGFDEAFEVTHNDVDICLTLYEQGYYNVLRNDVVLFH
CCCCEEEEECCEEEEEHHCCCCCCCCCHHHHCCCCCCEEEEEEHHHHHHHHHHCCEEEEE
HESFSRGDDEVDEEKNRRNMHARDMTYEKHPKLEKYDPFYSPLLTQTENNYRFGDEIYSV
ECCCCCCCCHHHHHHHHCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHH
IYRKPQKADRLRPAAGYMEVSPTVKVTETGYHDDMQLRGFAYNGNKVYYNPVIFLWNEQN
HHCCCCHHHCCCCCCCCEEECCCEEEEECCCCCCCEEEEEEECCCEEEECCEEEEECCCC
CYRIKVQSVCDRVFHLRKGVDKNINYAPFFCGIDTTDMESGTYRCAIRADGKYYDAQTDV
EEEEEHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCEEECCCCCE
VIDG
EEEC
>Mature Secondary Structure
MFLTRAAQIIGKEGFKTFGYALQQKMHQNMTDEKAYSIYQKKIAPKQRITDNKADCTAIC
CCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCCCCCCCHHHHH
RHSGSYESMLAAVSGMDAEYIAVCDESCEFDKDYTAIVSHYIRIQKRAGRSLIYIYTDSE
HCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCH
KYNQEAGCGLPDCKPDYSWDTLLSYNYIGDAFVAKKNALIDAINECKNHGAVDNINYYEL
HHCCCCCCCCCCCCCCCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
SLIILSKCKTSDVGHIHQVLVKDIRTDSKSYRTADDGMAAFKKMILESSEINVNIVADKH
EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
DSAVEHVHYITNEYDLVSIIIPSKDNPDILKCCLQSIRKFTKYINYEIVVVDNGSNDSNR
CHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHH
KEYEKLVDTFEGQASYVYEKADFNFSHMCNIGAAKAKGNLLLFLNDDIEIIGQDYEDTDW
HHHHHHHHHHCCCCEEEEEECCCCHHHHCCCCCCCCCCCEEEEECCCEEEECCCCCCHHH
LSVLVGQAKQESTGAVGAKLLYPDSSYIQHVGVINYESSCFAHLYAKAVDDENIKAHRNY
HHHHHCCCCCCCCCCCCEEEECCCHHHHHHEEEEEECCHHHHHHHHHHCCCCCCEECCCC
ADYDCLCVTGACFMIEKAKFDKAGGFDEAFEVTHNDVDICLTLYEQGYYNVLRNDVVLFH
CCCCEEEEECCEEEEEHHCCCCCCCCCHHHHCCCCCCEEEEEEHHHHHHHHHHCCEEEEE
HESFSRGDDEVDEEKNRRNMHARDMTYEKHPKLEKYDPFYSPLLTQTENNYRFGDEIYSV
ECCCCCCCCHHHHHHHHCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHH
IYRKPQKADRLRPAAGYMEVSPTVKVTETGYHDDMQLRGFAYNGNKVYYNPVIFLWNEQN
HHCCCCHHHCCCCCCCCEEECCCEEEEECCCCCCCEEEEEEECCCEEEECCEEEEECCCC
CYRIKVQSVCDRVFHLRKGVDKNINYAPFFCGIDTTDMESGTYRCAIRADGKYYDAQTDV
EEEEEHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCEEECCCCCE
VIDG
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]