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The map label for this gene is atpD [H]

Identifier: 238897239

GI number: 238897239

Start: 5238735

End: 5240117

Strand: Reverse

Name: atpD [H]

Synonym: KP1_5514

Alternate gene names: 238897239

Gene position: 5240117-5238735 (Counterclockwise)

Preceding gene: 238897240

Following gene: 238897238

Centisome position: 99.84

GC content: 55.24

Gene sequence:

>1383_bases
ATGGCTACTGGAAAGATTGTCCAGGTAATCGGCGCCGTGGTCGACGTCGAGTTCCCTCAGGATGCCGTACCACGCGTGTA
CGAAGCCCTTGAGGTACAGAATGGTAATGAAGTTCTGGTGCTGGAAGTTCAGCAGCAGCTGGGCGGCGGTATCGTACGTA
CCATCGCCATGGGTTCTTCTGATGGTCTGCGCCGCGGTCTGGATGTAAAAGACCTCGAGCACCCGATCGAAGTCCCGGTA
GGTAAAGCAACGCTGGGTCGTATCATGAACGTACTGGGTCAACCGGTTGACATGAAAGGCGACATCGGCGAAGAAGAGCG
TTGGGCTATCCACCGCGCGGCACCGTCCTATGAAGAGCTGTCCAGCTCTCAGGAACTGCTGGAAACCGGCATCAAAGTTA
TCGACCTGATGTGTCCGTTCGCGAAGGGCGGTAAAGTTGGTCTGTTCGGCGGTGCGGGTGTAGGTAAAACTGTAAACATG
ATGGAGCTGATCCGTAACATCGCGATCGAGCACTCCGGTTACTCTGTGTTTGCGGGCGTAGGTGAGCGTACTCGTGAGGG
TAACGACTTCTACCACGAAATGACCGACTCCAACGTTATCGATAAAGTATCCCTGGTGTACGGCCAGATGAACGAGCCGC
CGGGAAACCGTCTGCGTGTTGCGCTGACCGGCCTGACCATGGCTGAGAAATTCCGTGACGAAGGTCGTGACGTACTGCTG
TTCGTCGATAACATCTATCGTTACACCCTGGCCGGTACTGAAGTATCCGCGCTGCTGGGTCGTATGCCTTCAGCGGTAGG
TTATCAGCCGACCCTGGCGGAAGAGATGGGCGTTCTGCAGGAACGTATCACCTCCACCAAAACCGGTTCTATCACCTCCG
TACAGGCGGTATACGTACCGGCGGATGACTTAACTGACCCATCCCCAGCCACTACCTTTGCTCACTTAGATGCAACCGTA
GTACTGAGCCGTCAGATCGCATCCCTGGGTATCTACCCGGCCGTTGACCCGCTGGATTCCACCAGCCGTCAGCTGGATCC
GCTGGTTGTTGGTCAGGAACACTACGACACCGCGCGTGGCGTTCAGTCCATCCTGCAGCGTTATCAGGAACTGAAAGACA
TTATCGCCATCCTCGGTATGGACGAACTGTCTGAAGAAGACAAACTGGTGGTAGCTCGCGCGCGTAAGATCCAGCGCTTC
CTGTCCCAGCCGTTCTTCGTGGCAGAAGTCTTTACCGGTTCTCCGGGCAAATACGTGGCGCTGAAAGACACCATCCGTGG
CTTTAAAGGCATCATGGAAGGCGAATACGATCACCTGCCAGAGCAGGCGTTCTACATGGTCGGTTCCATCGACGAAGCCG
TGGAAAAAGCCAAAAAACTTTAA

Upstream 100 bases:

>100_bases
TATACAACAAAGCTCGTCAGGCCAGCATTACTCAGGAACTCACCGAGATCGTCTCGGGGGCCGCCGCGGTTTAACCAGGT
TATTTCGTAGAGGATTTAAG

Downstream 100 bases:

>100_bases
CGCCTTAATCGGAGGGTGATATGGCAATGACTTACCACCTGGACGTCGTCAGCGCAGAGCAACAAATGTTCTCTGGTCTG
GTCGAAAAAATCCAGGTAAC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MATGKIVQVIGAVVDVEFPQDAVPRVYEALEVQNGNEVLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPV
GKATLGRIMNVLGQPVDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNM
MELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLL
FVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATV
VLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRF
LSQPFFVAEVFTGSPGKYVALKDTIRGFKGIMEGEYDHLPEQAFYMVGSIDEAVEKAKKL

Sequences:

>Translated_460_residues
MATGKIVQVIGAVVDVEFPQDAVPRVYEALEVQNGNEVLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPV
GKATLGRIMNVLGQPVDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNM
MELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLL
FVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATV
VLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRF
LSQPFFVAEVFTGSPGKYVALKDTIRGFKGIMEGEYDHLPEQAFYMVGSIDEAVEKAKKL
>Mature_459_residues
ATGKIVQVIGAVVDVEFPQDAVPRVYEALEVQNGNEVLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVG
KATLGRIMNVLGQPVDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMM
ELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLF
VDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVV
LSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFL
SQPFFVAEVFTGSPGKYVALKDTIRGFKGIMEGEYDHLPEQAFYMVGSIDEAVEKAKKL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=466, Percent_Identity=71.0300429184549, Blast_Score=654, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=321, Percent_Identity=28.0373831775701, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI19913428, Length=356, Percent_Identity=24.438202247191, Blast_Score=103, Evalue=5e-22,
Organism=Homo sapiens, GI50345984, Length=303, Percent_Identity=25.4125412541254, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI4757810, Length=303, Percent_Identity=25.4125412541254, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI19913426, Length=356, Percent_Identity=23.876404494382, Blast_Score=100, Evalue=3e-21,
Organism=Escherichia coli, GI1790170, Length=460, Percent_Identity=98.4782608695652, Blast_Score=920, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=317, Percent_Identity=29.6529968454259, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI1790172, Length=340, Percent_Identity=26.4705882352941, Blast_Score=113, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI25144756, Length=466, Percent_Identity=68.8841201716738, Blast_Score=639, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=321, Percent_Identity=28.9719626168224, Blast_Score=121, Evalue=8e-28,
Organism=Caenorhabditis elegans, GI17510931, Length=348, Percent_Identity=25.5747126436782, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17570191, Length=416, Percent_Identity=24.0384615384615, Blast_Score=104, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI71988080, Length=303, Percent_Identity=25.7425742574257, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71988063, Length=303, Percent_Identity=25.7425742574257, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71988074, Length=303, Percent_Identity=24.0924092409241, Blast_Score=87, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=458, Percent_Identity=67.9039301310044, Blast_Score=624, Evalue=1e-179,
Organism=Saccharomyces cerevisiae, GI6319603, Length=363, Percent_Identity=25.6198347107438, Blast_Score=109, Evalue=9e-25,
Organism=Saccharomyces cerevisiae, GI6319370, Length=405, Percent_Identity=24.6913580246914, Blast_Score=102, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6320016, Length=233, Percent_Identity=27.4678111587983, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24638766, Length=465, Percent_Identity=69.6774193548387, Blast_Score=642, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=465, Percent_Identity=65.5913978494624, Blast_Score=593, Evalue=1e-170,
Organism=Drosophila melanogaster, GI20129479, Length=331, Percent_Identity=27.4924471299094, Blast_Score=119, Evalue=6e-27,
Organism=Drosophila melanogaster, GI24583992, Length=321, Percent_Identity=28.0373831775701, Blast_Score=118, Evalue=8e-27,
Organism=Drosophila melanogaster, GI24583988, Length=321, Percent_Identity=27.4143302180685, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24583986, Length=321, Percent_Identity=27.4143302180685, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24583984, Length=321, Percent_Identity=27.4143302180685, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI281361666, Length=348, Percent_Identity=24.4252873563218, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24646341, Length=348, Percent_Identity=24.4252873563218, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI17136796, Length=348, Percent_Identity=24.4252873563218, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24658560, Length=342, Percent_Identity=25.4385964912281, Blast_Score=102, Evalue=7e-22,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=57.6086956521739, Blast_Score=95, Evalue=1e-19,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50211; Mature: 50080

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGKIVQVIGAVVDVEFPQDAVPRVYEALEVQNGNEVLVLEVQQQLGGGIVRTIAMGSS
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCEEEEEECCCC
DGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGQPVDMKGDIGEEERWAIHRAAPSYEEL
CHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHEEHCCCCCCHHHH
SSSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGV
HHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECC
GERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLL
CCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEE
FVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVP
EEECCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
ADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEECCHHHHHHHH
VQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFTGSPGKYVA
HHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEE
LKDTIRGFKGIMEGEYDHLPEQAFYMVGSIDEAVEKAKKL
EHHHHHHHHHHHCCCHHCCCHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
ATGKIVQVIGAVVDVEFPQDAVPRVYEALEVQNGNEVLVLEVQQQLGGGIVRTIAMGSS
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCEEEEEECCCC
DGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGQPVDMKGDIGEEERWAIHRAAPSYEEL
CHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHEEHCCCCCCHHHH
SSSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGV
HHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECC
GERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLL
CCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEE
FVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVP
EEECCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
ADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEECCHHHHHHHH
VQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFTGSPGKYVA
HHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEE
LKDTIRGFKGIMEGEYDHLPEQAFYMVGSIDEAVEKAKKL
EHHHHHHHHHHHCCCHHCCCHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA