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The map label for this gene is yieC [H]

Identifier: 238897227

GI number: 238897227

Start: 5227151

End: 5228782

Strand: Reverse

Name: yieC [H]

Synonym: KP1_5499

Alternate gene names: 238897227

Gene position: 5228782-5227151 (Counterclockwise)

Preceding gene: 238897229

Following gene: 238897226

Centisome position: 99.62

GC content: 51.35

Gene sequence:

>1632_bases
ATGAGAAAAAACAGGATCGCTTCGGCGATAGTCTTGCTGGCGCCACTTTGTTATTCAACTAATCTGCTAGCGAGCCAGCT
GACGGTGGAACAACGGCTTGAGCTGCTGGAAAAAGCGCTCAAAGACACGCAAAAAGAGCTCAAAAAATATCAGGACCAGG
AAAGAAAAAGAGACCAGATTTGGGCCTCATGGTCTCCACCTGCGGAAGGTCAGAAGCGCAAGACCGGGGGGGCGACCGCC
GGGCCGAAAACGGCGGTTAAACCGGATGCGGTGCTGGTTAAAAATCAACAACCTGTCACCGATGGCGCGCCAGCCTACAG
CGCGATGACGCTGAAAGACTTTAGCAAGTTCGTGAAAGATGAAATTGGCTTTAGCTATAACGGCTACTTCCGTTCCGGCT
GGGGGACCGCCTCGCACGGCTCGCCAAAATCATGGGCGATCGGTTCGCTTGGCCGCCTGGGTAATGAATATTCCGGCTGG
TTCGATCTGCAGCTGAAGCAGCGGGTGTTTCAGGAAGGCGATAAACGCGTCGACGCCATCGTGATGCTCGACGGGAACGT
CGGCCAGCAGTATTCCACTGGCTGGTTTGGTGACAATGCCGGCGGCGAAAACTACATTCAATTCTCGGATATGTATGTTA
ACACCAAAGGGTTCCTGCCGTTTGCGTCGGAAGCCGATTTCTGGGTCGGCAAACACGGGGCGCCAAAAATTGAAATCCAG
ATGCTGGACTGGAAAACGCAGAGAACCGATGCGGCGGCCGGCGTAGGGCTGGAAAACTGGCAGGTGGGCGCTGGGAAATT
CGATATCGCGTTGATTCGCGAAGATGTCGATGATTATGACCGTTCTTTAAGCAATAAGCAGCAAATTAACACCAACACCC
TGGACGTTCGCTACAAAGAGATTCCGCTGTGGGATAAAGCCAGCCTGATGGTTAGCGGACGCTATGTCGCCGCCAACCAA
AGTTCCTCTGAGAAATATAAAGAGGGCAATGAAGGTTATTATCCGTGGAAAGATACCTGGATGGCTGGTACCTCGTTAAC
GCAGAAATTTGCTAACGGCGGCTTTAACGAATTCTCTTTCTTACTGGCCAATAACTCTATTGCCAGCAGCTTCTCACGCT
ATGCCGGATCCAGCCCCTATACCACCTTTAATGGCCGCTATTATGGCGATCATACCAATGGCACCGCCGTGCGCTTAACC
TCGCAGGGGGAAACCTATTTACGCGATGACGTTATTATGGCGAATGCCATCGTCTACTCTTTTGGTAACGACGTCTATAG
CTACGAAACCGGAGCCCACTCCGATTTTGAATCTATCCGTACGGTTCTGCGACCGGCTTATATCTGGGATAAATATAACC
AGACCGGCGTCGAGCTGGGGTACTTCAAACAGCAAAACAAAGATGTTACCGGCAAGAAATATAACGAGTCCGGCTACAAG
ACCACGCTGTTCCATACCTTCAAAGTCAATACCAGTATGCTGACCTCGCGCCCGGAAATTCGTTTCTATGCCACCTATAT
TAAAGCGAAGGATATTGACCTGGATAAGGCCGCGAATAATACCACCAGCATTTTTGAAGACGGGAAGAACGATCAGTTTG
CCGTGGGGGCGCAGGCGGAAATCTGGTGGTGA

Upstream 100 bases:

>100_bases
CGCGACGTCAAACGGTATGGATACGGCTATTAGCACCGGCACGGAATAGGGTTGTTGTCGTGTTTTATTTACGCCAATGA
TTATATAAGGGAATATTATG

Downstream 100 bases:

>100_bases
GACGATAACTGAACGGACACAACGAAAGAGGAACAACGATGAAACGACATGCAATTTATTTCGCCCTGGCGTTGGCGGGC
GCGGCGTTTACCCTCCAGGC

Product: carbohydrate-specific outer membrane porin in cryptic operon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MRKNRIASAIVLLAPLCYSTNLLASQLTVEQRLELLEKALKDTQKELKKYQDQERKRDQIWASWSPPAEGQKRKTGGATA
GPKTAVKPDAVLVKNQQPVTDGAPAYSAMTLKDFSKFVKDEIGFSYNGYFRSGWGTASHGSPKSWAIGSLGRLGNEYSGW
FDLQLKQRVFQEGDKRVDAIVMLDGNVGQQYSTGWFGDNAGGENYIQFSDMYVNTKGFLPFASEADFWVGKHGAPKIEIQ
MLDWKTQRTDAAAGVGLENWQVGAGKFDIALIREDVDDYDRSLSNKQQINTNTLDVRYKEIPLWDKASLMVSGRYVAANQ
SSSEKYKEGNEGYYPWKDTWMAGTSLTQKFANGGFNEFSFLLANNSIASSFSRYAGSSPYTTFNGRYYGDHTNGTAVRLT
SQGETYLRDDVIMANAIVYSFGNDVYSYETGAHSDFESIRTVLRPAYIWDKYNQTGVELGYFKQQNKDVTGKKYNESGYK
TTLFHTFKVNTSMLTSRPEIRFYATYIKAKDIDLDKAANNTTSIFEDGKNDQFAVGAQAEIWW

Sequences:

>Translated_543_residues
MRKNRIASAIVLLAPLCYSTNLLASQLTVEQRLELLEKALKDTQKELKKYQDQERKRDQIWASWSPPAEGQKRKTGGATA
GPKTAVKPDAVLVKNQQPVTDGAPAYSAMTLKDFSKFVKDEIGFSYNGYFRSGWGTASHGSPKSWAIGSLGRLGNEYSGW
FDLQLKQRVFQEGDKRVDAIVMLDGNVGQQYSTGWFGDNAGGENYIQFSDMYVNTKGFLPFASEADFWVGKHGAPKIEIQ
MLDWKTQRTDAAAGVGLENWQVGAGKFDIALIREDVDDYDRSLSNKQQINTNTLDVRYKEIPLWDKASLMVSGRYVAANQ
SSSEKYKEGNEGYYPWKDTWMAGTSLTQKFANGGFNEFSFLLANNSIASSFSRYAGSSPYTTFNGRYYGDHTNGTAVRLT
SQGETYLRDDVIMANAIVYSFGNDVYSYETGAHSDFESIRTVLRPAYIWDKYNQTGVELGYFKQQNKDVTGKKYNESGYK
TTLFHTFKVNTSMLTSRPEIRFYATYIKAKDIDLDKAANNTTSIFEDGKNDQFAVGAQAEIWW
>Mature_543_residues
MRKNRIASAIVLLAPLCYSTNLLASQLTVEQRLELLEKALKDTQKELKKYQDQERKRDQIWASWSPPAEGQKRKTGGATA
GPKTAVKPDAVLVKNQQPVTDGAPAYSAMTLKDFSKFVKDEIGFSYNGYFRSGWGTASHGSPKSWAIGSLGRLGNEYSGW
FDLQLKQRVFQEGDKRVDAIVMLDGNVGQQYSTGWFGDNAGGENYIQFSDMYVNTKGFLPFASEADFWVGKHGAPKIEIQ
MLDWKTQRTDAAAGVGLENWQVGAGKFDIALIREDVDDYDRSLSNKQQINTNTLDVRYKEIPLWDKASLMVSGRYVAANQ
SSSEKYKEGNEGYYPWKDTWMAGTSLTQKFANGGFNEFSFLLANNSIASSFSRYAGSSPYTTFNGRYYGDHTNGTAVRLT
SQGETYLRDDVIMANAIVYSFGNDVYSYETGAHSDFESIRTVLRPAYIWDKYNQTGVELGYFKQQNKDVTGKKYNESGYK
TTLFHTFKVNTSMLTSRPEIRFYATYIKAKDIDLDKAANNTTSIFEDGKNDQFAVGAQAEIWW

Specific function: May be a sugar porin with a broad carbohydrate specificity (Potential) [H]

COG id: COG4580

COG function: function code G; Maltoporin (phage lambda and maltose receptor)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the porin LamB (TC 1.B.3) family [H]

Homologues:

Organism=Escherichia coli, GI1790157, Length=549, Percent_Identity=76.5027322404372, Blast_Score=840, Evalue=0.0,
Organism=Escherichia coli, GI1790469, Length=457, Percent_Identity=26.2582056892779, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003192
- InterPro:   IPR021570
- ProDom:   PD008788 [H]

Pfam domain/function: PF11471 DUF3205; PF02264 LamB [H]

EC number: NA

Molecular weight: Translated: 61060; Mature: 61060

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKNRIASAIVLLAPLCYSTNLLASQLTVEQRLELLEKALKDTQKELKKYQDQERKRDQI
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
WASWSPPAEGQKRKTGGATAGPKTAVKPDAVLVKNQQPVTDGAPAYSAMTLKDFSKFVKD
EECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEHHHHHHHHHHHH
EIGFSYNGYFRSGWGTASHGSPKSWAIGSLGRLGNEYSGWFDLQLKQRVFQEGDKRVDAI
HCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEHHHHHHHHHCCCCEEEEE
VMLDGNVGQQYSTGWFGDNAGGENYIQFSDMYVNTKGFLPFASEADFWVGKHGAPKIEIQ
EEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEECCCCCCEEEEE
MLDWKTQRTDAAAGVGLENWQVGAGKFDIALIREDVDDYDRSLSNKQQINTNTLDVRYKE
EECCCCCCCCHHHCCCCCCEEECCCCEEEEEEHHHHHHHHHHCCCCHHCCCCEEEEEEEE
IPLWDKASLMVSGRYVAANQSSSEKYKEGNEGYYPWKDTWMAGTSLTQKFANGGFNEFSF
CCCCCCCEEEEECEEEEECCCCCHHHHCCCCCCCCCCCCEECCHHHHHHHHCCCCCCEEE
LLANNSIASSFSRYAGSSPYTTFNGRYYGDHTNGTAVRLTSQGETYLRDDVIMANAIVYS
EEECCHHHHHHHHHCCCCCCEEECCEEECCCCCCCEEEEECCCCCHHHCCEEEEHEEEEE
FGNDVYSYETGAHSDFESIRTVLRPAYIWDKYNQTGVELGYFKQQNKDVTGKKYNESGYK
CCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEECCCCCE
TTLFHTFKVNTSMLTSRPEIRFYATYIKAKDIDLDKAANNTTSIFEDGKNDQFAVGAQAE
EEEEEEEEECHHHHCCCCCEEEEEEEEEEECCCHHHCCCCCHHHHCCCCCCEEEECCCEE
IWW
ECC
>Mature Secondary Structure
MRKNRIASAIVLLAPLCYSTNLLASQLTVEQRLELLEKALKDTQKELKKYQDQERKRDQI
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
WASWSPPAEGQKRKTGGATAGPKTAVKPDAVLVKNQQPVTDGAPAYSAMTLKDFSKFVKD
EECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEHHHHHHHHHHHH
EIGFSYNGYFRSGWGTASHGSPKSWAIGSLGRLGNEYSGWFDLQLKQRVFQEGDKRVDAI
HCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEHHHHHHHHHCCCCEEEEE
VMLDGNVGQQYSTGWFGDNAGGENYIQFSDMYVNTKGFLPFASEADFWVGKHGAPKIEIQ
EEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEECCCCCCEEEEE
MLDWKTQRTDAAAGVGLENWQVGAGKFDIALIREDVDDYDRSLSNKQQINTNTLDVRYKE
EECCCCCCCCHHHCCCCCCEEECCCCEEEEEEHHHHHHHHHHCCCCHHCCCCEEEEEEEE
IPLWDKASLMVSGRYVAANQSSSEKYKEGNEGYYPWKDTWMAGTSLTQKFANGGFNEFSF
CCCCCCCEEEEECEEEEECCCCCHHHHCCCCCCCCCCCCEECCHHHHHHHHCCCCCCEEE
LLANNSIASSFSRYAGSSPYTTFNGRYYGDHTNGTAVRLTSQGETYLRDDVIMANAIVYS
EEECCHHHHHHHHHCCCCCCEEECCEEECCCCCCCEEEEECCCCCHHHCCEEEEHEEEEE
FGNDVYSYETGAHSDFESIRTVLRPAYIWDKYNQTGVELGYFKQQNKDVTGKKYNESGYK
CCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEECCCCCE
TTLFHTFKVNTSMLTSRPEIRFYATYIKAKDIDLDKAANNTTSIFEDGKNDQFAVGAQAE
EEEEEEEEECHHHHCCCCCEEEEEEEEEEECCCHHHCCCCCHHHHCCCCCCEEEECCCEE
IWW
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA