Click here to switch to the map view.

The map label for this gene is yidP [H]

Identifier: 238897194

GI number: 238897194

Start: 5193159

End: 5193881

Strand: Direct

Name: yidP [H]

Synonym: KP1_5464

Alternate gene names: 238897194

Gene position: 5193159-5193881 (Clockwise)

Preceding gene: 238897188

Following gene: 238897199

Centisome position: 98.95

GC content: 58.37

Gene sequence:

>723_bases
GTGATCTACAAATCCATTGCTGACCGCCTGCGGCTGCGGCTGAATTCCGCCGACTTCGCCATCGGCAGCCCGCTACCAGG
AGAGAAAAAACTGGCCGAGGAGTTCGGGGTGGCGCGCATGACTATTCGCAAAGCCATCGATCTGCTGGTGGACTGGGGAT
TGGTTGTGCGTCGCCACGGCTCGGGAACTTACGTGGCGCGTAAAGACGTCCATCATGAAACCAGCAATCTGACCGGCCTG
GCGGAAGTGCTGCGCAAGCAGGGTAAAGAGGTGGTGAGTCAGGTGCTGGCCTTCGAGGTGATGCCCGCCCCGCCGGCCAT
CGCCAGTCTGCTGCGGATTAAAATTGATGAACGGATCTACTTCTCACGGCGGGTGCGCTACGTCGACGGCAAGCCGCTGA
TGCTGGAGGATAGCTATATGCCGGTGAAGCTGTTCCGCAACCTGTCGCTGAGTCATCTGGAAGGGTCGAAATTTGATTAT
ATTGAGAAAGAGTGCGGGATCATCATCAGCGGGAACTATGAAACGCTGACGCCGGTGCTGGCGGACAAGCAGCTGGCGCG
CTCAATGAACGTCCCGGAGCAGACGCCGCTGCTGCGTATTACCTCCCTTTCCTACAGCGACAGCGGCGAGTTTCTTAACT
ATTCGGTCATGTTCCGCAACGCCAGCGAGTATCAGGTGGACTATCACCTGCGCCGCGTCCAGGCGCAAAGCCCGCTAGCT
TAG

Upstream 100 bases:

>100_bases
TTAACTAAATGAATGTTTCTTAATCGATTGTAATTAAAACACTTTTTTAGAAAAAAGAGCATAAAGCGACATCCCCTTTT
CCTGCACAAGAGGACTACTG

Downstream 100 bases:

>100_bases
CCCCCAGAACAGCACGGCGAGTAGCTGCGGGGTGATAATGCGCAGGAACATCACCAGCGGATAGACGGTGGCGTAAGAGA
GCGCCGCTGCGCCGCTGGTG

Product: putative GntR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MIYKSIADRLRLRLNSADFAIGSPLPGEKKLAEEFGVARMTIRKAIDLLVDWGLVVRRHGSGTYVARKDVHHETSNLTGL
AEVLRKQGKEVVSQVLAFEVMPAPPAIASLLRIKIDERIYFSRRVRYVDGKPLMLEDSYMPVKLFRNLSLSHLEGSKFDY
IEKECGIIISGNYETLTPVLADKQLARSMNVPEQTPLLRITSLSYSDSGEFLNYSVMFRNASEYQVDYHLRRVQAQSPLA

Sequences:

>Translated_240_residues
MIYKSIADRLRLRLNSADFAIGSPLPGEKKLAEEFGVARMTIRKAIDLLVDWGLVVRRHGSGTYVARKDVHHETSNLTGL
AEVLRKQGKEVVSQVLAFEVMPAPPAIASLLRIKIDERIYFSRRVRYVDGKPLMLEDSYMPVKLFRNLSLSHLEGSKFDY
IEKECGIIISGNYETLTPVLADKQLARSMNVPEQTPLLRITSLSYSDSGEFLNYSVMFRNASEYQVDYHLRRVQAQSPLA
>Mature_240_residues
MIYKSIADRLRLRLNSADFAIGSPLPGEKKLAEEFGVARMTIRKAIDLLVDWGLVVRRHGSGTYVARKDVHHETSNLTGL
AEVLRKQGKEVVSQVLAFEVMPAPPAIASLLRIKIDERIYFSRRVRYVDGKPLMLEDSYMPVKLFRNLSLSHLEGSKFDY
IEKECGIIISGNYETLTPVLADKQLARSMNVPEQTPLLRITSLSYSDSGEFLNYSVMFRNASEYQVDYHLRRVQAQSPLA

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=236, Percent_Identity=80.5084745762712, Blast_Score=402, Evalue=1e-114,
Organism=Escherichia coli, GI1786950, Length=224, Percent_Identity=33.0357142857143, Blast_Score=143, Evalue=9e-36,
Organism=Escherichia coli, GI87082252, Length=223, Percent_Identity=24.6636771300448, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1790540, Length=210, Percent_Identity=29.5238095238095, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788418, Length=215, Percent_Identity=22.7906976744186, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27222; Mature: 27222

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYKSIADRLRLRLNSADFAIGSPLPGEKKLAEEFGVARMTIRKAIDLLVDWGLVVRRHG
CCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCEEEECC
SGTYVARKDVHHETSNLTGLAEVLRKQGKEVVSQVLAFEVMPAPPAIASLLRIKIDERIY
CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEE
FSRRVRYVDGKPLMLEDSYMPVKLFRNLSLSHLEGSKFDYIEKECGIIISGNYETLTPVL
EEHEEEEECCCEEEEECCCCHHHHHHCCCHHHCCCCCCCHHHHHCCEEEECCCHHHHHHH
ADKQLARSMNVPEQTPLLRITSLSYSDSGEFLNYSVMFRNASEYQVDYHLRRVQAQSPLA
HHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIYKSIADRLRLRLNSADFAIGSPLPGEKKLAEEFGVARMTIRKAIDLLVDWGLVVRRHG
CCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCEEEECC
SGTYVARKDVHHETSNLTGLAEVLRKQGKEVVSQVLAFEVMPAPPAIASLLRIKIDERIY
CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEE
FSRRVRYVDGKPLMLEDSYMPVKLFRNLSLSHLEGSKFDYIEKECGIIISGNYETLTPVL
EEHEEEEECCCEEEEECCCCHHHHHHCCCHHHCCCCCCCHHHHHCCEEEECCCHHHHHHH
ADKQLARSMNVPEQTPLLRITSLSYSDSGEFLNYSVMFRNASEYQVDYHLRRVQAQSPLA
HHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]