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The map label for this gene is radC [C]

Identifier: 238897079

GI number: 238897079

Start: 5074054

End: 5074719

Strand: Reverse

Name: radC [C]

Synonym: KP1_5330

Alternate gene names: 238897079

Gene position: 5074719-5074054 (Counterclockwise)

Preceding gene: 238897085

Following gene: 238897078

Centisome position: 96.69

GC content: 53.3

Gene sequence:

>666_bases
ATGGACGGAATGGAAAATCTGATGCCACGGGAGAAGATGCTGCAATACGGCATCGAAACGCTAACGGATGTTGAGCTGCT
GGCGCTTTTTCTGCGCGTCGGCACGCGTCGTCAGGATGTGCTCAGCTATGCCCAGGCGTTACTACAGCGTTTTGGCTCAC
TCTACGCTCTGCTTTCCGCTGATAAAGCGCAACTGATTGCTGTGGACGGACTGGGGCTGGCGAAATATGCGCAACTGAAG
GGCATTGCCGAGCTGGCGCGACGCTATTTTAGCTCGCAGCTGGTCGAGGAGGCCGCGCTGGTCACCCCCTCGATGACGCG
CGAGTTTTTACAAAGCCAGCTGACGGAAGAGGAGCGCGAGATCTTTATGGTGATCTTTTTAGATAATCAGAACCGGGTGT
TGAAACATAGTCGTCTTTTTTCTGGTACTCTTAGCCACGTTGAGGTGCATCCGCGAGAAATTGTACGCGAAGCTATCAAA
GTGAACGCCGCCGCCGTGATCCTTGCGCATAATCATCCCTCCGGTAGCCCGGAGCCAAGTCAGGCCGACAGACTGATTAC
CGAAAGGGTGATAAAATGTTGTAGATTCATGGAGATACGCGTGCTTGATCATCTGGTTATCGGCCGCGGTGCGTATGTAT
CTTTTGCCGAACGTGGCTGGATTTAG

Upstream 100 bases:

>100_bases
CCGGGCATTCACTTTGCGAGCGGCTACGCAGGGTGAAAATCGGCGGGTCGGCAGCGCCGTCAGGCTGTGCCAGGATAGGC
TGATTCACCCAGGAGGGCGC

Downstream 100 bases:

>100_bases
CCCCGAACTGGCGATCCTTCGGGATCTTTGTCTGTTCGGGACTTGAGCACATCGCCGAGTCAGCGTATACTACGCCACCT
TTGAGAATCTCGGGTTTGGC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MDGMENLMPREKMLQYGIETLTDVELLALFLRVGTRRQDVLSYAQALLQRFGSLYALLSADKAQLIAVDGLGLAKYAQLK
GIAELARRYFSSQLVEEAALVTPSMTREFLQSQLTEEEREIFMVIFLDNQNRVLKHSRLFSGTLSHVEVHPREIVREAIK
VNAAAVILAHNHPSGSPEPSQADRLITERVIKCCRFMEIRVLDHLVIGRGAYVSFAERGWI

Sequences:

>Translated_221_residues
MDGMENLMPREKMLQYGIETLTDVELLALFLRVGTRRQDVLSYAQALLQRFGSLYALLSADKAQLIAVDGLGLAKYAQLK
GIAELARRYFSSQLVEEAALVTPSMTREFLQSQLTEEEREIFMVIFLDNQNRVLKHSRLFSGTLSHVEVHPREIVREAIK
VNAAAVILAHNHPSGSPEPSQADRLITERVIKCCRFMEIRVLDHLVIGRGAYVSFAERGWI
>Mature_221_residues
MDGMENLMPREKMLQYGIETLTDVELLALFLRVGTRRQDVLSYAQALLQRFGSLYALLSADKAQLIAVDGLGLAKYAQLK
GIAELARRYFSSQLVEEAALVTPSMTREFLQSQLTEEEREIFMVIFLDNQNRVLKHSRLFSGTLSHVEVHPREIVREAIK
VNAAAVILAHNHPSGSPEPSQADRLITERVIKCCRFMEIRVLDHLVIGRGAYVSFAERGWI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family. YicR subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=215, Percent_Identity=72.0930232558139, Blast_Score=335, Evalue=2e-93,
Organism=Escherichia coli, GI2367100, Length=121, Percent_Identity=49.5867768595041, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1788997, Length=121, Percent_Identity=47.9338842975207, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1788312, Length=121, Percent_Identity=48.7603305785124, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- InterPro:   IPR022820 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25013; Mature: 25013

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGMENLMPREKMLQYGIETLTDVELLALFLRVGTRRQDVLSYAQALLQRFGSLYALLSA
CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
DKAQLIAVDGLGLAKYAQLKGIAELARRYFSSQLVEEAALVTPSMTREFLQSQLTEEERE
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHCE
IFMVIFLDNQNRVLKHSRLFSGTLSHVEVHPREIVREAIKVNAAAVILAHNHPSGSPEPS
EEEEEEECCCCHHHHHHHHHHHHHHHHEECHHHHHHHHHHHCCEEEEEEECCCCCCCCHH
QADRLITERVIKCCRFMEIRVLDHLVIGRGAYVSFAERGWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
>Mature Secondary Structure
MDGMENLMPREKMLQYGIETLTDVELLALFLRVGTRRQDVLSYAQALLQRFGSLYALLSA
CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
DKAQLIAVDGLGLAKYAQLKGIAELARRYFSSQLVEEAALVTPSMTREFLQSQLTEEERE
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHCE
IFMVIFLDNQNRVLKHSRLFSGTLSHVEVHPREIVREAIKVNAAAVILAHNHPSGSPEPS
EEEEEEECCCCHHHHHHHHHHHHHHHHEECHHHHHHHHHHHCCEEEEEEECCCCCCCCHH
QADRLITERVIKCCRFMEIRVLDHLVIGRGAYVSFAERGWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA