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The map label for this gene is xylA [H]

Identifier: 238897029

GI number: 238897029

Start: 5020985

End: 5022319

Strand: Reverse

Name: xylA [H]

Synonym: KP1_5276

Alternate gene names: 238897029

Gene position: 5022319-5020985 (Counterclockwise)

Preceding gene: 238897030

Following gene: 238897028

Centisome position: 95.69

GC content: 57.0

Gene sequence:

>1335_bases
ATGGAGTTCTCTATGCAGACCTATTTCGATCAACTCGATCGCGTTCGTTACGAAGGCCCGAAATCCACTAACCCGCTGGC
TTTCCGTCATTACAACCCGGATGAACTGGTGCTGGGCAAACGGATGGAAGATCATCTGCGTTTTGCGGCCTGTTACTGGC
ACACCTTCTGCTGGAATGGCGCCGATATGTTTGGCGTGGGCTCCTTTGATCGTCCCTGGCAGCAGCCTGGCGACGCCCTG
GAGATGGCCAAACGCAAAGCCGATGTGGCGTTCGAATTCTTCCATAAACTCAACGTGCCTTACTACTGCTTCCACGACGT
TGACGTCTCGCCGGAAGGCGCTTCCCTCAAGGAGTACAGCAATAACTTCGCCCGGATGGTCGAGGTGCTGGCTGAGAAAC
AGCAGCAGAGCGGCGTGAAGCTTCTGTGGGGGACCGCAAACTGCTTTACCAACCCGCGCTACGGCGCCGGCGCGGCCACC
AACCCGGATCCGGAAGTATTTAGCTGGGCGGCCACCCAGGTGGTCACCGCCATGAATGCCACCCATCAACTGGGCGGTGA
AAACTATGTGCTGTGGGGCGGTCGCGAGGGCTATGAAACCCTGCTGAATACCGACCTGCGCCAGGAGCGTGAGCAGATTG
GCCGCTTTATGCAGCTGGTGGTGGAGCATAAGCATAAAATCGGCTTTAAAGGTACGCTGCTGATTGAGCCCAAACCGCAG
GAGCCGACCAAGCATCAGTATGACTATGATGCCTCTACCGTTTACGGCTTCCTCAAACAGTTTGGTCTGGAAAAAGAGAT
TAAACTGAATATTGAAGCTAACCATGCCACGCTCGCCGGCCATTCGTTCCATCATGAAATTGCGACGGCCATTGCGCTGG
GGCTGTTCGGCTCCGTTGACGCCAACCGCGGCGATCCGCAGCTGGGCTGGGATACCGACCAGTTCCCGAACAGCGTCGAA
GAGAACGCGCTGGTGATGTATGAAATCCTCAAAGCGGGCGGCTTCACCACCGGCGGCCTCAACTTTGATGCGAAAGTGCG
CCGGCAGAGCACCGACAAATACGATCTGTTCTATGGTCATATTGGCGCGATGGATACCATGGCGCTGTCGCTGAAGGTCG
CGGCGCGGATGATCGAGGACGGCGAACTGGATAAGCGCGTGGCCAGACGCTACGCCGGCTGGAACGGTGAGCTGGGGCAG
CAGATCCTTAACGGGCAGATGACCCTGAGCGATATTGCCCAGTATGCCGCTCAGCATCAGCTGGCGCCGCAGCATCGCAG
CGGCCAGCAGGAACAACTGGAAAACCTGGTCAACCATTATCTGTTTGACAAGTAA

Upstream 100 bases:

>100_bases
CTCTTGCTGGTGCCAGCGCCTGGAGGTTCACGCTCTTGCCGCCTTCCTGCAACTCGAATTATTTAGGGTATCTGATTGGT
TATTCGCCGCATCTCTGAAT

Downstream 100 bases:

>100_bases
TCATACGGCGGTGCCCGGGGTGACCGGCGCCGCAACCAGGATGCTCTGTTCGCGCCACGCTCAGCCGTGGCGCGCGTTTA
AGGAGAGGGAGTATGTATAT

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MEFSMQTYFDQLDRVRYEGPKSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMFGVGSFDRPWQQPGDAL
EMAKRKADVAFEFFHKLNVPYYCFHDVDVSPEGASLKEYSNNFARMVEVLAEKQQQSGVKLLWGTANCFTNPRYGAGAAT
NPDPEVFSWAATQVVTAMNATHQLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQLVVEHKHKIGFKGTLLIEPKPQ
EPTKHQYDYDASTVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDPQLGWDTDQFPNSVE
ENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKVAARMIEDGELDKRVARRYAGWNGELGQ
QILNGQMTLSDIAQYAAQHQLAPQHRSGQQEQLENLVNHYLFDK

Sequences:

>Translated_444_residues
MEFSMQTYFDQLDRVRYEGPKSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMFGVGSFDRPWQQPGDAL
EMAKRKADVAFEFFHKLNVPYYCFHDVDVSPEGASLKEYSNNFARMVEVLAEKQQQSGVKLLWGTANCFTNPRYGAGAAT
NPDPEVFSWAATQVVTAMNATHQLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQLVVEHKHKIGFKGTLLIEPKPQ
EPTKHQYDYDASTVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDPQLGWDTDQFPNSVE
ENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKVAARMIEDGELDKRVARRYAGWNGELGQ
QILNGQMTLSDIAQYAAQHQLAPQHRSGQQEQLENLVNHYLFDK
>Mature_444_residues
MEFSMQTYFDQLDRVRYEGPKSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMFGVGSFDRPWQQPGDAL
EMAKRKADVAFEFFHKLNVPYYCFHDVDVSPEGASLKEYSNNFARMVEVLAEKQQQSGVKLLWGTANCFTNPRYGAGAAT
NPDPEVFSWAATQVVTAMNATHQLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQLVVEHKHKIGFKGTLLIEPKPQ
EPTKHQYDYDASTVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDPQLGWDTDQFPNSVE
ENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKVAARMIEDGELDKRVARRYAGWNGELGQ
QILNGQMTLSDIAQYAAQHQLAPQHRSGQQEQLENLVNHYLFDK

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=440, Percent_Identity=90.4545454545455, Blast_Score=857, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013452
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 50376; Mature: 50376

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS00172 XYLOSE_ISOMERASE_1 ; PS00173 XYLOSE_ISOMERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFSMQTYFDQLDRVRYEGPKSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNG
CCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCC
ADMFGVGSFDRPWQQPGDALEMAKRKADVAFEFFHKLNVPYYCFHDVDVSPEGASLKEYS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHH
NNFARMVEVLAEKQQQSGVKLLWGTANCFTNPRYGAGAATNPDPEVFSWAATQVVTAMNA
HHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
THQLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQLVVEHKHKIGFKGTLLIEPKPQ
HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
EPTKHQYDYDASTVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVD
CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCEEECCCHHHHHHHHHHHHHHHCCCC
ANRGDPQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGH
CCCCCCCCCCCCHHCCCCHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEEC
IGAMDTMALSLKVAARMIEDGELDKRVARRYAGWNGELGQQILNGQMTLSDIAQYAAQHQ
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHC
LAPQHRSGQQEQLENLVNHYLFDK
CCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEFSMQTYFDQLDRVRYEGPKSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNG
CCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCC
ADMFGVGSFDRPWQQPGDALEMAKRKADVAFEFFHKLNVPYYCFHDVDVSPEGASLKEYS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHH
NNFARMVEVLAEKQQQSGVKLLWGTANCFTNPRYGAGAATNPDPEVFSWAATQVVTAMNA
HHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
THQLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQLVVEHKHKIGFKGTLLIEPKPQ
HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
EPTKHQYDYDASTVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVD
CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCEEECCCHHHHHHHHHHHHHHHCCCC
ANRGDPQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGH
CCCCCCCCCCCCHHCCCCHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEEC
IGAMDTMALSLKVAARMIEDGELDKRVARRYAGWNGELGQQILNGQMTLSDIAQYAAQHQ
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHC
LAPQHRSGQQEQLENLVNHYLFDK
CCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA