Click here to switch to the map view.

The map label for this gene is yhjJ [H]

Identifier: 238896975

GI number: 238896975

Start: 4952956

End: 4954458

Strand: Reverse

Name: yhjJ [H]

Synonym: KP1_5218

Alternate gene names: 238896975

Gene position: 4954458-4952956 (Counterclockwise)

Preceding gene: 238896976

Following gene: 238896973

Centisome position: 94.4

GC content: 60.28

Gene sequence:

>1503_bases
ATGCAGGGCACAACAATTAAACTCTTAACGGGCGGTTTGCTGATGGTAGCGGCGGCCGGTTATGTGCAGGCAGAAGCGCT
CCAGCCTGATCCGGCCTGGCAACAAGGGACCTTAGCGAATGGTTTGTCGTGGCAGGTATTGGCCACGCCGCAACGTCCCA
GCGACCGTATCGAAGTCCGTTTGTCCGTCAATATTGGCTCGCTGAGCGAAAGCACTCAGCAGAGCGGTTTCAGCCGCTTT
ATTCCCCGCCTGGCGTTGACGCAAAGCGGCAGCCTGCCGACGATGCAGGCGCGCTCTTTATGGCAGCAGAGTATTGACCC
GAAGCGTCCTCTGCCGCCGGCCATCGTCTCCTACGATTACACGATGTTTAATCTCAGCCTGCCCAATAACCGCAACGATC
TGTTGAAAGAGGCGCTGAGCTGGCTGGCGGACGCCAGCGGTAAACTGGCCATTACGCCTGAATCGATCAATCATGCGCTG
CAGGGCAGCGACATGGTGGCGACCTGGCCACTGGATACCAAAGAGGGTTGGTGGCGCTATCGCCTGAAAGGGTCCACCAT
GCTGGGCCATGACCCCGCCGCGCCGCTGAAGCAGCCGATCGACGTGGCGCAGCTGAAAGACTTTTATCAAAAATGGTACA
CCCCCGACGCCATGACGCTGATCGTGGTGGGGAATGTCGACAGCCGCAGCGTTGCCGAGCAAATCAATAAGACCTTTGGC
GATCTGAAGGGCAAGCGGGAAACCCCCGCAGCGGTGCCGACCTTATCGCCGCTGCCTACCGTGCCGGTCAGCATCATGAC
CAACGCGGTGCGTCAGGACAAACTGTCCATCATGTGGGATGCGCCATGGCAGCCGATCCGCGACTCCGCGGCGCTGCAGC
GCTACTGGCGTGACGATCTCGCCCGTGAAGCGCTGTTCTGGCACGTGCAGCAGAGCCTGAGCAAAAATAACGTGAAGGAT
ATTGGCCTTGGCTTTGACTGCCGGGTGCTATATCAGCGCGCGCAGTGCGCCATCAACATCGATTCCCCGGGCGAGCGCCT
GAACAACAACCTGAGCGTGGTTTCGCGCGAGCTGGCGAAAGTGCGGGACAACGGGCTGCCTCAGGAGGAGTTTGACGCGC
TTATCGCTCAGAAAAGCCTCGAGCTGCAGAAGCTGTTTGCCACCTATGCGCGCACTGACACCGACATTCTGATGAGCCAG
CGCATGCGCTCCCTGCAGAATCAGGTGGTGGACATCGCGCCGGAGCAGTACCAGAAGCTGCGTCAGGAGTTCCTCAACTC
CCTGACGGTGGACATGCTGAACCAGTATCTGCGCCAGCAGCTCTCGCAGGACATGGCGCTGGTGCTGCAACAGCCGAAGG
GCGAACCGGAATACAATATGAAGGAGCTGCAGGCCACCTGGGAAAAACTGATGGCGCCGAATCCGGCGGCCACGGCGGCT
AGCGGCAGCGCCGATACGGTTGACGCCCACAGCGAGGCCAGCGACATCCCGCCGGGGCAGTAA

Upstream 100 bases:

>100_bases
TCGTCTCCGTGTGGTCTAACCGACGTATTTCACTCTCACTTTTTTCGGCAGCCCGTCAGTGGGGTGCTGTTGTAACCAGG
AATGTTCATCAGGGGTTCAC

Downstream 100 bases:

>100_bases
CCTAACGCCTCTCCGGCGCGCCAGCGGCGGCCGGAGAGCGCTTTGTGCGGAGAATTACTGCGGCATCGCTTCCCGCGGGA
TGATCGCCCCGCGATACTGG

Product: putative peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 500

Protein sequence:

>500_residues
MQGTTIKLLTGGLLMVAAAGYVQAEALQPDPAWQQGTLANGLSWQVLATPQRPSDRIEVRLSVNIGSLSESTQQSGFSRF
IPRLALTQSGSLPTMQARSLWQQSIDPKRPLPPAIVSYDYTMFNLSLPNNRNDLLKEALSWLADASGKLAITPESINHAL
QGSDMVATWPLDTKEGWWRYRLKGSTMLGHDPAAPLKQPIDVAQLKDFYQKWYTPDAMTLIVVGNVDSRSVAEQINKTFG
DLKGKRETPAAVPTLSPLPTVPVSIMTNAVRQDKLSIMWDAPWQPIRDSAALQRYWRDDLAREALFWHVQQSLSKNNVKD
IGLGFDCRVLYQRAQCAINIDSPGERLNNNLSVVSRELAKVRDNGLPQEEFDALIAQKSLELQKLFATYARTDTDILMSQ
RMRSLQNQVVDIAPEQYQKLRQEFLNSLTVDMLNQYLRQQLSQDMALVLQQPKGEPEYNMKELQATWEKLMAPNPAATAA
SGSADTVDAHSEASDIPPGQ

Sequences:

>Translated_500_residues
MQGTTIKLLTGGLLMVAAAGYVQAEALQPDPAWQQGTLANGLSWQVLATPQRPSDRIEVRLSVNIGSLSESTQQSGFSRF
IPRLALTQSGSLPTMQARSLWQQSIDPKRPLPPAIVSYDYTMFNLSLPNNRNDLLKEALSWLADASGKLAITPESINHAL
QGSDMVATWPLDTKEGWWRYRLKGSTMLGHDPAAPLKQPIDVAQLKDFYQKWYTPDAMTLIVVGNVDSRSVAEQINKTFG
DLKGKRETPAAVPTLSPLPTVPVSIMTNAVRQDKLSIMWDAPWQPIRDSAALQRYWRDDLAREALFWHVQQSLSKNNVKD
IGLGFDCRVLYQRAQCAINIDSPGERLNNNLSVVSRELAKVRDNGLPQEEFDALIAQKSLELQKLFATYARTDTDILMSQ
RMRSLQNQVVDIAPEQYQKLRQEFLNSLTVDMLNQYLRQQLSQDMALVLQQPKGEPEYNMKELQATWEKLMAPNPAATAA
SGSADTVDAHSEASDIPPGQ
>Mature_500_residues
MQGTTIKLLTGGLLMVAAAGYVQAEALQPDPAWQQGTLANGLSWQVLATPQRPSDRIEVRLSVNIGSLSESTQQSGFSRF
IPRLALTQSGSLPTMQARSLWQQSIDPKRPLPPAIVSYDYTMFNLSLPNNRNDLLKEALSWLADASGKLAITPESINHAL
QGSDMVATWPLDTKEGWWRYRLKGSTMLGHDPAAPLKQPIDVAQLKDFYQKWYTPDAMTLIVVGNVDSRSVAEQINKTFG
DLKGKRETPAAVPTLSPLPTVPVSIMTNAVRQDKLSIMWDAPWQPIRDSAALQRYWRDDLAREALFWHVQQSLSKNNVKD
IGLGFDCRVLYQRAQCAINIDSPGERLNNNLSVVSRELAKVRDNGLPQEEFDALIAQKSLELQKLFATYARTDTDILMSQ
RMRSLQNQVVDIAPEQYQKLRQEFLNSLTVDMLNQYLRQQLSQDMALVLQQPKGEPEYNMKELQATWEKLMAPNPAATAA
SGSADTVDAHSEASDIPPGQ

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

Organism=Escherichia coli, GI1789946, Length=500, Percent_Identity=78.6, Blast_Score=816, Evalue=0.0,
Organism=Escherichia coli, GI1787770, Length=433, Percent_Identity=22.1709006928406, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR011765
- InterPro:   IPR007863 [H]

Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]

EC number: NA

Molecular weight: Translated: 55756; Mature: 55756

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGTTIKLLTGGLLMVAAAGYVQAEALQPDPAWQQGTLANGLSWQVLATPQRPSDRIEVR
CCCCEEEHHHCCHHHHHHHCHHEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEE
LSVNIGSLSESTQQSGFSRFIPRLALTQSGSLPTMQARSLWQQSIDPKRPLPPAIVSYDY
EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHEECCE
TMFNLSLPNNRNDLLKEALSWLADASGKLAITPESINHALQGSDMVATWPLDTKEGWWRY
EEEEEECCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHCCCCEEEECCCCCCCCCEEE
RLKGSTMLGHDPAAPLKQPIDVAQLKDFYQKWYTPDAMTLIVVGNVDSRSVAEQINKTFG
EEECCEEECCCCCCCHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH
DLKGKRETPAAVPTLSPLPTVPVSIMTNAVRQDKLSIMWDAPWQPIRDSAALQRYWRDDL
HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHH
AREALFWHVQQSLSKNNVKDIGLGFDCRVLYQRAQCAINIDSPGERLNNNLSVVSRELAK
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCEEEECCCCHHHHCCCHHHHHHHHHH
VRDNGLPQEEFDALIAQKSLELQKLFATYARTDTDILMSQRMRSLQNQVVDIAPEQYQKL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RQEFLNSLTVDMLNQYLRQQLSQDMALVLQQPKGEPEYNMKELQATWEKLMAPNPAATAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
SGSADTVDAHSEASDIPPGQ
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQGTTIKLLTGGLLMVAAAGYVQAEALQPDPAWQQGTLANGLSWQVLATPQRPSDRIEVR
CCCCEEEHHHCCHHHHHHHCHHEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEE
LSVNIGSLSESTQQSGFSRFIPRLALTQSGSLPTMQARSLWQQSIDPKRPLPPAIVSYDY
EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHEECCE
TMFNLSLPNNRNDLLKEALSWLADASGKLAITPESINHALQGSDMVATWPLDTKEGWWRY
EEEEEECCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHCCCCEEEECCCCCCCCCEEE
RLKGSTMLGHDPAAPLKQPIDVAQLKDFYQKWYTPDAMTLIVVGNVDSRSVAEQINKTFG
EEECCEEECCCCCCCHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH
DLKGKRETPAAVPTLSPLPTVPVSIMTNAVRQDKLSIMWDAPWQPIRDSAALQRYWRDDL
HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHH
AREALFWHVQQSLSKNNVKDIGLGFDCRVLYQRAQCAINIDSPGERLNNNLSVVSRELAK
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCEEEECCCCHHHHCCCHHHHHHHHHH
VRDNGLPQEEFDALIAQKSLELQKLFATYARTDTDILMSQRMRSLQNQVVDIAPEQYQKL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RQEFLNSLTVDMLNQYLRQQLSQDMALVLQQPKGEPEYNMKELQATWEKLMAPNPAATAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
SGSADTVDAHSEASDIPPGQ
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 9298646 [H]