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The map label for this gene is lptC [H]

Identifier: 238896706

GI number: 238896706

Start: 4682771

End: 4683346

Strand: Direct

Name: lptC [H]

Synonym: KP1_4921

Alternate gene names: 238896706

Gene position: 4682771-4683346 (Clockwise)

Preceding gene: 238896705

Following gene: 238896707

Centisome position: 89.22

GC content: 50.0

Gene sequence:

>576_bases
ATGAGTAAAACCAGACGTTGGGTTATCATTTTACTGTCGCTGCTCGCGCTGATCCTTATCGGCCTGAATCTGGCGAATAC
GGACGACACGGCCCAGCCGGAGGTCAATCCTAACGACCCTACGTATAAAAGCGAACATACCGACACCGTGGTATACAGTC
CGGAAGGCGCCCTGAGCTATCGGCTGATTGCCGAGCACGTGGAATATTTTTCCGATCAGGAGGTCTCCTGGTTTACCAAA
CCGGTGATGACCACCTTTGATACTAACAAGGTGCCTACCTGGTCGGTCAGAGCAGACAAAGCGAAGCTGACGAATGACCG
GATGCTCTATCTTTACGGGCACGTTGAGGTGAATGCGCTCGCGCCAGATTCTCAACTGCGCAAAATTACGACGGATAACG
CCCAGATAAATCTGGTAACGCAGGACGTTACCTCCGATGACATGGTGACGTTATACGGCACCACATTTAATTCCAGCGGC
CTGAAAATGCGTGGAAACCTTCGCAGCAAAAATGCCGAGCTGATTGAAAAGGTGAGAACCTCTTATGAAATTCAGAACAA
ACAAACTCAGCCTTAA

Upstream 100 bases:

>100_bases
ATGTCACGCGAATTAACGGCGGACGCGGCGCGGTACGCGAAGTCTGCGATTTGTTACTATTGGCGCAGGGCAAGTTGGAT
GAGGCCAAAGGGCAATCAAT

Downstream 100 bases:

>100_bases
GATTGCGCTCGCCGGCGCGTTACTGGCCGCCAGCCTGCCGGCCCTCGCCAAGACGGGCGATACCGATCAGCCGATCCATA
TCGAATCCGATCAGCAGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSKTRRWVIILLSLLALILIGLNLANTDDTAQPEVNPNDPTYKSEHTDTVVYSPEGALSYRLIAEHVEYFSDQEVSWFTK
PVMTTFDTNKVPTWSVRADKAKLTNDRMLYLYGHVEVNALAPDSQLRKITTDNAQINLVTQDVTSDDMVTLYGTTFNSSG
LKMRGNLRSKNAELIEKVRTSYEIQNKQTQP

Sequences:

>Translated_191_residues
MSKTRRWVIILLSLLALILIGLNLANTDDTAQPEVNPNDPTYKSEHTDTVVYSPEGALSYRLIAEHVEYFSDQEVSWFTK
PVMTTFDTNKVPTWSVRADKAKLTNDRMLYLYGHVEVNALAPDSQLRKITTDNAQINLVTQDVTSDDMVTLYGTTFNSSG
LKMRGNLRSKNAELIEKVRTSYEIQNKQTQP
>Mature_190_residues
SKTRRWVIILLSLLALILIGLNLANTDDTAQPEVNPNDPTYKSEHTDTVVYSPEGALSYRLIAEHVEYFSDQEVSWFTKP
VMTTFDTNKVPTWSVRADKAKLTNDRMLYLYGHVEVNALAPDSQLRKITTDNAQINLVTQDVTSDDMVTLYGTTFNSSGL
KMRGNLRSKNAELIEKVRTSYEIQNKQTQP

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family [H]

Homologues:

Organism=Escherichia coli, GI1789591, Length=191, Percent_Identity=85.3403141361257, Blast_Score=347, Evalue=2e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010664 [H]

Pfam domain/function: PF06835 DUF1239 [H]

EC number: NA

Molecular weight: Translated: 21662; Mature: 21531

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTRRWVIILLSLLALILIGLNLANTDDTAQPEVNPNDPTYKSEHTDTVVYSPEGALSY
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHH
RLIAEHVEYFSDQEVSWFTKPVMTTFDTNKVPTWSVRADKAKLTNDRMLYLYGHVEVNAL
HHHHHHHHHHCCCCCCCHHCCEEEEECCCCCCEEEEECCCEECCCCEEEEEEEEEEEEEE
APDSQLRKITTDNAQINLVTQDVTSDDMVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT
CCCHHHHEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEECCCCCCCHHHHHHHHH
SYEIQNKQTQP
HHEECCCCCCC
>Mature Secondary Structure 
SKTRRWVIILLSLLALILIGLNLANTDDTAQPEVNPNDPTYKSEHTDTVVYSPEGALSY
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHH
RLIAEHVEYFSDQEVSWFTKPVMTTFDTNKVPTWSVRADKAKLTNDRMLYLYGHVEVNAL
HHHHHHHHHHCCCCCCCHHCCEEEEECCCCCCEEEEECCCEECCCCEEEEEEEEEEEEEE
APDSQLRKITTDNAQINLVTQDVTSDDMVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT
CCCHHHHEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEECCCCCCCHHHHHHHHH
SYEIQNKQTQP
HHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]