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The map label for this gene is yrbH [H]

Identifier: 238896704

GI number: 238896704

Start: 4681207

End: 4682193

Strand: Direct

Name: yrbH [H]

Synonym: KP1_4919

Alternate gene names: 238896704

Gene position: 4681207-4682193 (Clockwise)

Preceding gene: 238896703

Following gene: 238896705

Centisome position: 89.19

GC content: 59.07

Gene sequence:

>987_bases
ATGTCGCAAATAGATTTGCCCACGGATTTTGACTTTCAACAGGCAGGCCGTCAGGTGCTGGAAATTGAACGTGAAGGTCT
GGCCCAGCTCGATCAATACATAAATGAAGACTTTACCCATGCCTGCGAAACGATTTTCCGCTGCGGCGGGAAAGTCGTGG
TGATGGGGATGGGCAAATCCGGCCACATCGGCCGCAAAATGGCGGCAACCTTCGCCAGTACCGGCACCTCGGCATTTTTT
GTCCACCCCGGCGAAGCGGCGCACGGTGATTTAGGTATGGTCACCCCGCAGGATGTGGTAATTGCGCTGTCGAACTCCGG
CGAATCGAATGAAATCCTCTCGCTGATCCCGGTCCTCAAGCGCCAGCAGGTGAAGCTTATCTGTATCACCAGCCGGCCGG
AGAGCAGCATGGCGCGCGCGGCGGATATCCATCTGTGCGTGAAAGTGCCGAAGGAGGCCTGCCCGTTAGGACTGGCGCCC
ACGTCGAGCACCACCGCCGCGCTGGTGATGGGTGATGCCCTCGCCGTCGCCCTGCTGGAAGCCCGCGGCTTTACCGCTGA
GGATTTCGCCCTGTCGCATCCGGGCGGCGCACTCGGCCGTAAGCTGTTGCTGCGGGTCAATGATATTATGCATACCGGTG
ATGAAATCCCGCACGTCGGCCTGCAGGCGACCCTGCGCGATGCGCTGCTGGAAATCACGCGTAAAAATTTAGGCATGACC
GCTATCTGCGATGACGATATGAACATCATCGGTATCTTTACCGACGGTGACCTGCGCCGGGTCTTCGATACCGGCGTTGA
TATGCGCGATGCCAGCATTGCCGACGTCATGACCCGGGGAGGTATCCGCATCCGCCCCGGCACTCTGGCGGTGGATGCGC
TAAACCTGATGCAATCCCGTCATATCACCTGCGTGCTGGTTGCCGATGGCGACCATCTGCTGGGTGTGGTACATATGCAC
GATCTGCTGCGCGCGGGCGTAGTGTAA

Upstream 100 bases:

>100_bases
GACGACTGGTTGGCGCGCTGCTGGTCGGCGGCTTTGTGGTTTGGTTGGCGATGCTGTTTTGGACAGCACCGCTCTTCGTT
GAATGATTCGGGATAACATC

Downstream 100 bases:

>100_bases
GTAAGGAAAAAATAATGAATAATGCTGATGCTCAGTTAGCGACCTGCTACGGGCCGGTAAGCCAGGCGTTTGTCGATCGC
GCGGCGAAGATCCGTCTACT

Product: D-arabinose 5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MSQIDLPTDFDFQQAGRQVLEIEREGLAQLDQYINEDFTHACETIFRCGGKVVVMGMGKSGHIGRKMAATFASTGTSAFF
VHPGEAAHGDLGMVTPQDVVIALSNSGESNEILSLIPVLKRQQVKLICITSRPESSMARAADIHLCVKVPKEACPLGLAP
TSSTTAALVMGDALAVALLEARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMT
AICDDDMNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMH
DLLRAGVV

Sequences:

>Translated_328_residues
MSQIDLPTDFDFQQAGRQVLEIEREGLAQLDQYINEDFTHACETIFRCGGKVVVMGMGKSGHIGRKMAATFASTGTSAFF
VHPGEAAHGDLGMVTPQDVVIALSNSGESNEILSLIPVLKRQQVKLICITSRPESSMARAADIHLCVKVPKEACPLGLAP
TSSTTAALVMGDALAVALLEARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMT
AICDDDMNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMH
DLLRAGVV
>Mature_327_residues
SQIDLPTDFDFQQAGRQVLEIEREGLAQLDQYINEDFTHACETIFRCGGKVVVMGMGKSGHIGRKMAATFASTGTSAFFV
HPGEAAHGDLGMVTPQDVVIALSNSGESNEILSLIPVLKRQQVKLICITSRPESSMARAADIHLCVKVPKEACPLGLAPT
SSTTAALVMGDALAVALLEARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTA
ICDDDMNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHD
LLRAGVV

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=328, Percent_Identity=84.1463414634146, Blast_Score=560, Evalue=1e-161,
Organism=Escherichia coli, GI87082151, Length=316, Percent_Identity=46.2025316455696, Blast_Score=285, Evalue=3e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 35130; Mature: 34999

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIDLPTDFDFQQAGRQVLEIEREGLAQLDQYINEDFTHACETIFRCGGKVVVMGMGKS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEECCCC
GHIGRKMAATFASTGTSAFFVHPGEAAHGDLGMVTPQDVVIALSNSGESNEILSLIPVLK
CCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHC
RQQVKLICITSRPESSMARAADIHLCVKVPKEACPLGLAPTSSTTAALVMGDALAVALLE
CCCEEEEEEECCCCHHHHHHHEEEEEEECCHHHCCCCCCCCCCCCEEEEHHHHHHHHHHH
ARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMT
HCCCCCHHCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEE
AICDDDMNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGGIRIRPGTLAVDALNLMQSR
EEECCCCCEEEEEECCCHHHHHHCCCCCCCCHHHHHHHCCCEEECCCCCHHHHHHHHHCC
HITCVLVADGDHLLGVVHMHDLLRAGVV
CEEEEEEECCCCEEEHHHHHHHHHHCCC
>Mature Secondary Structure 
SQIDLPTDFDFQQAGRQVLEIEREGLAQLDQYINEDFTHACETIFRCGGKVVVMGMGKS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEECCCC
GHIGRKMAATFASTGTSAFFVHPGEAAHGDLGMVTPQDVVIALSNSGESNEILSLIPVLK
CCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHC
RQQVKLICITSRPESSMARAADIHLCVKVPKEACPLGLAPTSSTTAALVMGDALAVALLE
CCCEEEEEEECCCCHHHHHHHEEEEEEECCHHHCCCCCCCCCCCCEEEEHHHHHHHHHHH
ARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMT
HCCCCCHHCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEE
AICDDDMNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGGIRIRPGTLAVDALNLMQSR
EEECCCCCEEEEEECCCHHHHHHCCCCCCCCHHHHHHHCCCEEECCCCCHHHHHHHHHCC
HITCVLVADGDHLLGVVHMHDLLRAGVV
CEEEEEEECCCCEEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]