Click here to switch to the map view.

The map label for this gene is ydeW [H]

Identifier: 238896605

GI number: 238896605

Start: 4585910

End: 4586881

Strand: Direct

Name: ydeW [H]

Synonym: KP1_4806

Alternate gene names: 238896605

Gene position: 4585910-4586881 (Clockwise)

Preceding gene: 238896597

Following gene: 238896606

Centisome position: 87.38

GC content: 64.3

Gene sequence:

>972_bases
ATGAGCGAAAAACGCATTACGGAAGAGAACCGCTACGCCGGGCTGGCGTTAGCCGAGGAAGAGCTGGTGGCGCGGGTGGC
GTGGTGCTACTACCACGACGGCCTGACGCAAAATGACATCGGCGAGCGTTTGGGGCTGCCGCGGCTGAAGATTTCCCGCC
TGCTGGAGAAAGGCCGCCAGTCCGGGGTGATCCGCGTGCAGATCAACTCGCGCTATGAGGGCTGTCTGGCACTGGAAAGT
GAACTCCAGCAGCGTTTTGGCCTCAAGATTGCCCGCGTACTGCCGGCGCTCAACACCCCGCCGATGAATACCCGGCTGGG
TATCGGCGCGGCGCAGTCGCTGATGGGCATTCTGCAGCCGGGACAGCTGCTGGCGGTCGGCTTCGGCGAAGCCACCATGA
GCTGCCTGCAGCATCTCAGCGGCTTTATCGGCTCGCAGCAGGTGCGGCTGGTGACCCTCTCCGGCGGCGTCGGCCCCTAT
ATGACCGGTATTGGCCAGCTGGATGCCGCCTGCAGCGTCAGCATTATCCCGGCGCCGCTGCGGGTCTCTTCGGCGGAGGT
CGCCGAGATCCTGCGCCGTGAGTCGAGCGTGCGCGACGTGATCCTCGCGGCGACGGCGGCGGACGCGGCGGTGGTTGGCA
TCGGCGCCATCGATCAGCGGCGCGACGCGACCATCCTGCGCTCCGGCTATATCAGCGAGGGCGAACAGCTTATGTACGCC
CGCAAAGGCGCGGTCGGCGACATTTTAGGTTATTTCCTGCAGGCCGACGGCAGGCCGGTAGAAGGACTGGAGATCCATCG
GGAACTGCTCGGCGTGACCCTTGATGAGCTAGCGCAGCTGCCGACCATCGTTGGCGTCGCCGGGGGAGAAGAAAAAGCGC
AGGCGATTTATGCCGCTCTGATTGGCAAGCGCATTAATGGCCTGGTAACGGAAGAGACAACAGCACGCGCGGTGCTTACC
CTGGCCTCCTGA

Upstream 100 bases:

>100_bases
AAATGGGCCAGCGATGAAAGATCCGTTTTGCCAGTCGGCTCACACTTTCCGGCCGCGCAATAGCGAACATATGATCTAAA
TTTTTATAAGAGTTCAATTT

Downstream 100 bases:

>100_bases
CGGCCTGGCGCCGCGCGACAACAGCGAGGCGCATGTCATGAGTTACCTGTTAGCGTTAGATGCCGGGACCGGCAGCATTC
GGGCGGTTATTTTCGATCTT

Product: putative SorC-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MSEKRITEENRYAGLALAEEELVARVAWCYYHDGLTQNDIGERLGLPRLKISRLLEKGRQSGVIRVQINSRYEGCLALES
ELQQRFGLKIARVLPALNTPPMNTRLGIGAAQSLMGILQPGQLLAVGFGEATMSCLQHLSGFIGSQQVRLVTLSGGVGPY
MTGIGQLDAACSVSIIPAPLRVSSAEVAEILRRESSVRDVILAATAADAAVVGIGAIDQRRDATILRSGYISEGEQLMYA
RKGAVGDILGYFLQADGRPVEGLEIHRELLGVTLDELAQLPTIVGVAGGEEKAQAIYAALIGKRINGLVTEETTARAVLT
LAS

Sequences:

>Translated_323_residues
MSEKRITEENRYAGLALAEEELVARVAWCYYHDGLTQNDIGERLGLPRLKISRLLEKGRQSGVIRVQINSRYEGCLALES
ELQQRFGLKIARVLPALNTPPMNTRLGIGAAQSLMGILQPGQLLAVGFGEATMSCLQHLSGFIGSQQVRLVTLSGGVGPY
MTGIGQLDAACSVSIIPAPLRVSSAEVAEILRRESSVRDVILAATAADAAVVGIGAIDQRRDATILRSGYISEGEQLMYA
RKGAVGDILGYFLQADGRPVEGLEIHRELLGVTLDELAQLPTIVGVAGGEEKAQAIYAALIGKRINGLVTEETTARAVLT
LAS
>Mature_322_residues
SEKRITEENRYAGLALAEEELVARVAWCYYHDGLTQNDIGERLGLPRLKISRLLEKGRQSGVIRVQINSRYEGCLALESE
LQQRFGLKIARVLPALNTPPMNTRLGIGAAQSLMGILQPGQLLAVGFGEATMSCLQHLSGFIGSQQVRLVTLSGGVGPYM
TGIGQLDAACSVSIIPAPLRVSSAEVAEILRRESSVRDVILAATAADAAVVGIGAIDQRRDATILRSGYISEGEQLMYAR
KGAVGDILGYFLQADGRPVEGLEIHRELLGVTLDELAQLPTIVGVAGGEEKAQAIYAALIGKRINGLVTEETTARAVLTL
AS

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsrACDBFG operon and its own transcription. In the presence of AI- 2, lsrR is inactivated by binding phospho-AI-2, leading to the trans

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=303, Percent_Identity=65.6765676567657, Blast_Score=405, Evalue=1e-114,
Organism=Escherichia coli, GI87082414, Length=324, Percent_Identity=26.5432098765432, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34491; Mature: 34360

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKRITEENRYAGLALAEEELVARVAWCYYHDGLTQNDIGERLGLPRLKISRLLEKGRQ
CCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
SGVIRVQINSRYEGCLALESELQQRFGLKIARVLPALNTPPMNTRLGIGAAQSLMGILQP
CCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCC
GQLLAVGFGEATMSCLQHLSGFIGSQQVRLVTLSGGVGPYMTGIGQLDAACSVSIIPAPL
CCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCCCCCEEEEECCCC
RVSSAEVAEILRRESSVRDVILAATAADAAVVGIGAIDQRRDATILRSGYISEGEQLMYA
CCCHHHHHHHHHHHHHHHHHEEEECCCCCCEEEECCCCCCCCHHHHHHCCCCCCHHHHHH
RKGAVGDILGYFLQADGRPVEGLEIHRELLGVTLDELAQLPTIVGVAGGEEKAQAIYAAL
HCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHCCCCEEEECCCHHHHHHHHHHH
IGKRINGLVTEETTARAVLTLAS
HHHHHCCCCCCCCHHEEEEEECC
>Mature Secondary Structure 
SEKRITEENRYAGLALAEEELVARVAWCYYHDGLTQNDIGERLGLPRLKISRLLEKGRQ
CCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
SGVIRVQINSRYEGCLALESELQQRFGLKIARVLPALNTPPMNTRLGIGAAQSLMGILQP
CCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCC
GQLLAVGFGEATMSCLQHLSGFIGSQQVRLVTLSGGVGPYMTGIGQLDAACSVSIIPAPL
CCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCCCCCEEEEECCCC
RVSSAEVAEILRRESSVRDVILAATAADAAVVGIGAIDQRRDATILRSGYISEGEQLMYA
CCCHHHHHHHHHHHHHHHHHEEEECCCCCCEEEECCCCCCCCHHHHHHCCCCCCHHHHHH
RKGAVGDILGYFLQADGRPVEGLEIHRELLGVTLDELAQLPTIVGVAGGEEKAQAIYAAL
HCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHCCCCEEEECCCHHHHHHHHHHH
IGKRINGLVTEETTARAVLTLAS
HHHHHCCCCCCCCHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA