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The map label for this gene is ygfZ [C]

Identifier: 238896438

GI number: 238896438

Start: 4416854

End: 4417837

Strand: Direct

Name: ygfZ [C]

Synonym: KP1_4614

Alternate gene names: 238896438

Gene position: 4416854-4417837 (Clockwise)

Preceding gene: 238896435

Following gene: 238896441

Centisome position: 84.15

GC content: 61.89

Gene sequence:

>984_bases
ATGGCTTTTACACCTTTTCCTCCGCGTCAGCCTTCCTCTTCCGCTCGTCTGCCGTTAACGCTGATGACCCTGGATGACTG
GGCGCTGGCGACAATTAGCGGGCCGGACAGCGAAAAATATCTGCAGGGGCAGATTACCGCCGATGTGAGTCATCTCACCG
ATGCCCAGCATCTGCTTGCCGCCCACTGTGATGCCAAAGGCAAGATGTGGAGCAACCTGCGCGTATTCCGTCGCGAGGGC
GGCTTCGCGTGGATTGAGCGCCGCAGCCTGCGCGACGCGCAGCTGACCGAGCTGAAAAAATATGCCGTCTTCTCCAAAGT
CACCATCGCCGCCAACGACGATCTGGTTCTGCTGGGAGTAGCCGGCTTCCAGGCGCGCGCCGCGCTGGCGCCGCTGTTCG
CCGCCTTGCCCGACGCTGCCACCCCGGTGGTCAGCGAAGGCGCCACCAGCCTGCTGTGGTTTGAACACCCGGGCGAGCGC
TTCCTGCTGGTGACCGATGTCGACACCGCCAACCGCGTCACCGACGCGTTGCGCGGCGAAGCGCAGTTTAACAACAGCCA
ACAGTGGCTGGCGCTGAATATTGAAGCCGGTCTGCCGGTTATCGACAGCGCCAACAGCGGGCAGTTCATTCCGCAGGCCA
CCAACCTGCAGGCGCTGGGCGGCATCAGCTTCAAAAAAGGCTGCTACACCGGCCAGGAAATGGTCGCGAGGGCGAAATTC
CGCGGCGCCAATAAGCGCGCGCTGTGGACGCTGTCAGGGACCGCCAGCCGGGTGCCGGAATCCGGGGAAGACCTGGAGCT
GAAGATGGGCGACAACTGGCGCCGCACCGGTACGGTGCTGGCAGCCGTACAGCTGGATGACGGAAGCCTGATGGTCCAGG
TAGTGATGAATAACGACATGGAACCGGATAGCGTGTTCCGTGTACGCGACGATGCCGGCAGCCTGAGCATCAAACCATTG
CCGTATTCGCTGGAAGAAAATTAA

Upstream 100 bases:

>100_bases
CACGCCAGCGCACAAATGGCCTGTTGAAAGCACTTGCAATGCACTATAGCTCTTTTACCATTGGTCACACACACTGCGTT
AAGCGATTCAGGATATGACT

Downstream 100 bases:

>100_bases
GGAAAAGTTCCCGGCTTGCGGCGCTTGCGCTTTAGCCGGGCTACACGACCGCAGTATTTTGTAGCCACGGTAAGCGCAGC
GCCACCGTGGGATGTTTATC

Product: putative global regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MAFTPFPPRQPSSSARLPLTLMTLDDWALATISGPDSEKYLQGQITADVSHLTDAQHLLAAHCDAKGKMWSNLRVFRREG
GFAWIERRSLRDAQLTELKKYAVFSKVTIAANDDLVLLGVAGFQARAALAPLFAALPDAATPVVSEGATSLLWFEHPGER
FLLVTDVDTANRVTDALRGEAQFNNSQQWLALNIEAGLPVIDSANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKF
RGANKRALWTLSGTASRVPESGEDLELKMGDNWRRTGTVLAAVQLDDGSLMVQVVMNNDMEPDSVFRVRDDAGSLSIKPL
PYSLEEN

Sequences:

>Translated_327_residues
MAFTPFPPRQPSSSARLPLTLMTLDDWALATISGPDSEKYLQGQITADVSHLTDAQHLLAAHCDAKGKMWSNLRVFRREG
GFAWIERRSLRDAQLTELKKYAVFSKVTIAANDDLVLLGVAGFQARAALAPLFAALPDAATPVVSEGATSLLWFEHPGER
FLLVTDVDTANRVTDALRGEAQFNNSQQWLALNIEAGLPVIDSANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKF
RGANKRALWTLSGTASRVPESGEDLELKMGDNWRRTGTVLAAVQLDDGSLMVQVVMNNDMEPDSVFRVRDDAGSLSIKPL
PYSLEEN
>Mature_326_residues
AFTPFPPRQPSSSARLPLTLMTLDDWALATISGPDSEKYLQGQITADVSHLTDAQHLLAAHCDAKGKMWSNLRVFRREGG
FAWIERRSLRDAQLTELKKYAVFSKVTIAANDDLVLLGVAGFQARAALAPLFAALPDAATPVVSEGATSLLWFEHPGERF
LLVTDVDTANRVTDALRGEAQFNNSQQWLALNIEAGLPVIDSANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKFR
GANKRALWTLSGTASRVPESGEDLELKMGDNWRRTGTVLAAVQLDDGSLMVQVVMNNDMEPDSVFRVRDDAGSLSIKPLP
YSLEEN

Specific function: Folate-binding protein involved in regulating the level of ATP-dnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication [H]

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tRNA-modifying ygfZ family [H]

Homologues:

Organism=Escherichia coli, GI1789265, Length=326, Percent_Identity=81.9018404907976, Blast_Score=552, Evalue=1e-158,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 35651; Mature: 35520

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFTPFPPRQPSSSARLPLTLMTLDDWALATISGPDSEKYLQGQITADVSHLTDAQHLLA
CCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCEEEEEEEECHHHHHHHHHHHH
AHCDAKGKMWSNLRVFRREGGFAWIERRSLRDAQLTELKKYAVFSKVTIAANDDLVLLGV
HHCCCCCCCHHCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHEEEEEEECCCCEEEEEE
AGFQARAALAPLFAALPDAATPVVSEGATSLLWFEHPGERFLLVTDVDTANRVTDALRGE
CCCHHHHHHHHHHHHCCCCCCCHHHCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHCCC
AQFNNSQQWLALNIEAGLPVIDSANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKF
CCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHH
RGANKRALWTLSGTASRVPESGEDLELKMGDNWRRTGTVLAAVQLDDGSLMVQVVMNNDM
CCCCCEEEEEECCCHHHCCCCCCCEEEEECCCCEECCEEEEEEEECCCCEEEEEEECCCC
EPDSVFRVRDDAGSLSIKPLPYSLEEN
CCCCEEEEECCCCCEEEECCCCCCCCC
>Mature Secondary Structure 
AFTPFPPRQPSSSARLPLTLMTLDDWALATISGPDSEKYLQGQITADVSHLTDAQHLLA
CCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCEEEEEEEECHHHHHHHHHHHH
AHCDAKGKMWSNLRVFRREGGFAWIERRSLRDAQLTELKKYAVFSKVTIAANDDLVLLGV
HHCCCCCCCHHCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHEEEEEEECCCCEEEEEE
AGFQARAALAPLFAALPDAATPVVSEGATSLLWFEHPGERFLLVTDVDTANRVTDALRGE
CCCHHHHHHHHHHHHCCCCCCCHHHCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHCCC
AQFNNSQQWLALNIEAGLPVIDSANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKF
CCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHH
RGANKRALWTLSGTASRVPESGEDLELKMGDNWRRTGTVLAAVQLDDGSLMVQVVMNNDM
CCCCCEEEEEECCCHHHCCCCCCCEEEEECCCCEECCEEEEEEEECCCCEEEEEEECCCC
EPDSVFRVRDDAGSLSIKPLPYSLEEN
CCCCEEEEECCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA