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The map label for this gene is togB [H]

Identifier: 238896367

GI number: 238896367

Start: 4348626

End: 4349912

Strand: Direct

Name: togB [H]

Synonym: KP1_4534

Alternate gene names: 238896367

Gene position: 4348626-4349912 (Clockwise)

Preceding gene: 238896366

Following gene: 238896372

Centisome position: 82.85

GC content: 56.8

Gene sequence:

>1287_bases
ATGAAAAACGTGCTGATAAGCGCCACCCTCTCCGCCACCCTGGGCCTTAGCGCCTTCTCTTCGCTAGCGCAGGATGTCGA
CCTGCGTATGTCCTGGTGGGGGGGCAACGGCCGCCATCAGGTCACCCTCAAGGCGCTGGAGGAATTCCACAAACAAAACC
CAGACATCAACGTCAAAGCAGAATACACCGGCTGGGACGGCCATCTTTCACGCCTGACCACCCAGATTGCCGGCGGTACC
GAGCCTGACGTGATGCAGACCAACTGGAACTGGCTGCCGATCTTTTCGAAAAATGGCGATGGCTTTTACGATCTGAATAC
CCTGAAAGACGAGATCGACCTCAGCCAGTTCGACGCCAAAGAACTGCAGTCCACCACGGTCAACGGCAAGCTTAACGGTA
TTCCAATTTCCGTCACCGCCCGCGTCTTCTACTTTAACGACGAAGCATGGAAAAAGGCGGGCATCCCCTTCCCGAAAACC
TGGGATGAACTCATGGCGGCGGGAAAAACTTTCGAAAGCAAGCTCGGGAAACAGTACTACCCGGTGGTGCTCGAACACCA
GGACGTGCTGGCCCTGCTCAACTCTTATATGGTGCAAAAATACAATCAGCCGGCCATCGATGAGAAAGGGCGAAAATTCT
CCTACAGCAAAGCGCAGTGGGCGGATTTCTTCGGTATGTATAAGAAGCTTATCGACAGCCATGTGATGCCGGACACCCGC
TACTATGCCTCCTTCGGCAAGAGCAACATGTACGAAATGAAGCCGTGGATCCAGGGCGAATGGGGCGGGACCTACATGTG
GAACTCCACCATCAACAAATATTCCGATAACCTGAAGCCGCCGGCGAAGCTGGTGCTGGGGGAATACCCGATGCTGCCGG
GCGCCACCGATGCCGGACTGTTCTTCAAGCCCGCGCAAATGTTGTCGATTGGCAAATCGACGAAAAACCCGCAGGCGGCG
GCGAAAGTGATTAACTTCCTGCTGAACAGCAAAGAAGGGGTGGATATTCTTGGACTGGAGCGCGGCGTGCCGCTGAGTAA
AGCGGCGGTCACCTACCTGACCGAGGATGGGGTAATCAAAGCCGACGATCCGGCGGTGTCCGGCCTGAAGCTGGCGCAAT
CCCTGCCCACCGCTCTGCCGGTCTCACCGTACTTCGACGATCCGCAGATCGTCGCCCAGTTCGGCACCACCCTGCAGTAC
ATCGACTACGGTAAAAAGTCGGTGGAAGAAGCGGCCGAGGACTTCCAGCGCCAGACCGACCGCATTCTGCGCCGCGCGAT
GCGCTAA

Upstream 100 bases:

>100_bases
CTGAATCGCAAAGTCTATTTCACCTTTGATCTCAACAAGTGTCACATCTTTGACGCCAAAACCGAACAGAACCTCTCTCT
GTGAACCCTGGAGCATAACA

Downstream 100 bases:

>100_bases
CCTGCCCGCCTGAACTCTCCCGTGGCGTCCGCCGCGGGAGAGCCTGCCTGCGTATCCTGTCAGAAGAAATATTTGAAGCG
CACCCGGGCGCCATAGCGTT

Product: putative oligogalacturonide ABC transport system periplasmic binding component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MKNVLISATLSATLGLSAFSSLAQDVDLRMSWWGGNGRHQVTLKALEEFHKQNPDINVKAEYTGWDGHLSRLTTQIAGGT
EPDVMQTNWNWLPIFSKNGDGFYDLNTLKDEIDLSQFDAKELQSTTVNGKLNGIPISVTARVFYFNDEAWKKAGIPFPKT
WDELMAAGKTFESKLGKQYYPVVLEHQDVLALLNSYMVQKYNQPAIDEKGRKFSYSKAQWADFFGMYKKLIDSHVMPDTR
YYASFGKSNMYEMKPWIQGEWGGTYMWNSTINKYSDNLKPPAKLVLGEYPMLPGATDAGLFFKPAQMLSIGKSTKNPQAA
AKVINFLLNSKEGVDILGLERGVPLSKAAVTYLTEDGVIKADDPAVSGLKLAQSLPTALPVSPYFDDPQIVAQFGTTLQY
IDYGKKSVEEAAEDFQRQTDRILRRAMR

Sequences:

>Translated_428_residues
MKNVLISATLSATLGLSAFSSLAQDVDLRMSWWGGNGRHQVTLKALEEFHKQNPDINVKAEYTGWDGHLSRLTTQIAGGT
EPDVMQTNWNWLPIFSKNGDGFYDLNTLKDEIDLSQFDAKELQSTTVNGKLNGIPISVTARVFYFNDEAWKKAGIPFPKT
WDELMAAGKTFESKLGKQYYPVVLEHQDVLALLNSYMVQKYNQPAIDEKGRKFSYSKAQWADFFGMYKKLIDSHVMPDTR
YYASFGKSNMYEMKPWIQGEWGGTYMWNSTINKYSDNLKPPAKLVLGEYPMLPGATDAGLFFKPAQMLSIGKSTKNPQAA
AKVINFLLNSKEGVDILGLERGVPLSKAAVTYLTEDGVIKADDPAVSGLKLAQSLPTALPVSPYFDDPQIVAQFGTTLQY
IDYGKKSVEEAAEDFQRQTDRILRRAMR
>Mature_428_residues
MKNVLISATLSATLGLSAFSSLAQDVDLRMSWWGGNGRHQVTLKALEEFHKQNPDINVKAEYTGWDGHLSRLTTQIAGGT
EPDVMQTNWNWLPIFSKNGDGFYDLNTLKDEIDLSQFDAKELQSTTVNGKLNGIPISVTARVFYFNDEAWKKAGIPFPKT
WDELMAAGKTFESKLGKQYYPVVLEHQDVLALLNSYMVQKYNQPAIDEKGRKFSYSKAQWADFFGMYKKLIDSHVMPDTR
YYASFGKSNMYEMKPWIQGEWGGTYMWNSTINKYSDNLKPPAKLVLGEYPMLPGATDAGLFFKPAQMLSIGKSTKNPQAA
AKVINFLLNSKEGVDILGLERGVPLSKAAVTYLTEDGVIKADDPAVSGLKLAQSLPTALPVSPYFDDPQIVAQFGTTLQY
IDYGKKSVEEAAEDFQRQTDRILRRAMR

Specific function: May play role in the degradation of type I rhamnogalacturonan derived from plant cell walls [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47978; Mature: 47978

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVLISATLSATLGLSAFSSLAQDVDLRMSWWGGNGRHQVTLKALEEFHKQNPDINVKA
CCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEHHHHHHHHHCCCCEEEEE
EYTGWDGHLSRLTTQIAGGTEPDVMQTNWNWLPIFSKNGDGFYDLNTLKDEIDLSQFDAK
EECCCCHHHHHHHHHHCCCCCCCEEECCCCEEEEEECCCCCEEEHHHHHHHHCHHHHCHH
ELQSTTVNGKLNGIPISVTARVFYFNDEAWKKAGIPFPKTWDELMAAGKTFESKLGKQYY
HHHHHCCCCEECCEEEEEEEEEEEECCHHHHHCCCCCCCCHHHHHHCCCHHHHHHCCCCC
PVVLEHQDVLALLNSYMVQKYNQPAIDEKGRKFSYSKAQWADFFGMYKKLIDSHVMPDTR
CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
YYASFGKSNMYEMKPWIQGEWGGTYMWNSTINKYSDNLKPPAKLVLGEYPMLPGATDAGL
HHHHCCCCCCEECCCCEECCCCCEEEECCHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCC
FFKPAQMLSIGKSTKNPQAAAKVINFLLNSKEGVDILGLERGVPLSKAAVTYLTEDGVIK
EECCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHEEEEECCCEEE
ADDPAVSGLKLAQSLPTALPVSPYFDDPQIVAQFGTTLQYIDYGKKSVEEAAEDFQRQTD
CCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHH
RILRRAMR
HHHHHHCC
>Mature Secondary Structure
MKNVLISATLSATLGLSAFSSLAQDVDLRMSWWGGNGRHQVTLKALEEFHKQNPDINVKA
CCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEHHHHHHHHHCCCCEEEEE
EYTGWDGHLSRLTTQIAGGTEPDVMQTNWNWLPIFSKNGDGFYDLNTLKDEIDLSQFDAK
EECCCCHHHHHHHHHHCCCCCCCEEECCCCEEEEEECCCCCEEEHHHHHHHHCHHHHCHH
ELQSTTVNGKLNGIPISVTARVFYFNDEAWKKAGIPFPKTWDELMAAGKTFESKLGKQYY
HHHHHCCCCEECCEEEEEEEEEEEECCHHHHHCCCCCCCCHHHHHHCCCHHHHHHCCCCC
PVVLEHQDVLALLNSYMVQKYNQPAIDEKGRKFSYSKAQWADFFGMYKKLIDSHVMPDTR
CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
YYASFGKSNMYEMKPWIQGEWGGTYMWNSTINKYSDNLKPPAKLVLGEYPMLPGATDAGL
HHHHCCCCCCEECCCCEECCCCCEEEECCHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCC
FFKPAQMLSIGKSTKNPQAAAKVINFLLNSKEGVDILGLERGVPLSKAAVTYLTEDGVIK
EECCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHEEEEECCCEEE
ADDPAVSGLKLAQSLPTALPVSPYFDDPQIVAQFGTTLQYIDYGKKSVEEAAEDFQRQTD
CCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHH
RILRRAMR
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]