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The map label for this gene is recO [H]

Identifier: 238896016

GI number: 238896016

Start: 3977676

End: 3978413

Strand: Reverse

Name: recO [H]

Synonym: KP1_4144

Alternate gene names: 238896016

Gene position: 3978413-3977676 (Counterclockwise)

Preceding gene: 238896017

Following gene: 238896015

Centisome position: 75.8

GC content: 59.89

Gene sequence:

>738_bases
GTGGATGGATGGCAGCGCGCCTTTGTCCTGCATAGCCGTCCGTGGAGCGAAACCAGCCTGATGCTGGACGTCTTCACGGA
AGAATCCGGTCGCGTGCGCCTGGTTGCCAAGGGCGCACGCTCCAAACGCTCTAATCTCAAAGGCGCTTTACAGCCCTTTA
CCCCCTTGTTGGTTCGCTTCGGCGGGCGCGGCGAAGTCAAAACCCTGCGCAGCGCGGAAGCCGTTTCGCTGGCGCTGCCG
CTCAGCGGCATCACCCTCTACAGCGGTCTCTACGTTAACGAGCTTATCTCCCGCGTGCTGGAGCACGAAACACGCTTCTC
CGAACTCTTTTTCGACTACCTGCACTGCATTCAGGCGCTCGCCGGGGCCAGCGGCTCGCCGGAGCCCGCGCTGCGGCGTT
TTGAGCTGGCGCTGCTCGGGCACCTGGGCTATGGCGTGGATTTTCTCCACTGCGCCGGGAGCGGCGAGCCGGTAGACGAC
ACCATGACCTACCGCTATCGTGAAGAAAAAGGCTTTATTGCCAGCCTGGTGATTGATAACAACACGTTTACCGGGCACCA
TTTGAAAGCATTGGCGAGTCGCGAGTTTCCTGATGTTGATACGCTGCGCGCCGCGAAGCGCTTTACCCGTATCGCCCTGA
AGCCCTATCTCGGCGGCAAACCGCTCAAGAGCCGGGAGTTGTTTCGCCAGTTTATGCCCGCGCGAAAGGCGCGAGCCGAT
AATACGAATAATGATTAA

Upstream 100 bases:

>100_bases
TGCACCTCGAGCTGTGGGTGAAAGTGAAATCCGGCTGGGCCGATGACGAGCGCGCCCTGCGCAGTCTCGGTTACGTTGAC
GACCTCTGAGTTAACGCAAC

Downstream 100 bases:

>100_bases
CGAGGATTGTCATGGCTGAATTATTGTTAGGGGTCAATATTGACCATATCGCGACCTTGCGTAACGCCCGCGGCACCGCT
TACCCGGATCCGGTTCAGGC

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MDGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVRFGGRGEVKTLRSAEAVSLALP
LSGITLYSGLYVNELISRVLEHETRFSELFFDYLHCIQALAGASGSPEPALRRFELALLGHLGYGVDFLHCAGSGEPVDD
TMTYRYREEKGFIASLVIDNNTFTGHHLKALASREFPDVDTLRAAKRFTRIALKPYLGGKPLKSRELFRQFMPARKARAD
NTNND

Sequences:

>Translated_245_residues
MDGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVRFGGRGEVKTLRSAEAVSLALP
LSGITLYSGLYVNELISRVLEHETRFSELFFDYLHCIQALAGASGSPEPALRRFELALLGHLGYGVDFLHCAGSGEPVDD
TMTYRYREEKGFIASLVIDNNTFTGHHLKALASREFPDVDTLRAAKRFTRIALKPYLGGKPLKSRELFRQFMPARKARAD
NTNND
>Mature_245_residues
MDGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVRFGGRGEVKTLRSAEAVSLALP
LSGITLYSGLYVNELISRVLEHETRFSELFFDYLHCIQALAGASGSPEPALRRFELALLGHLGYGVDFLHCAGSGEPVDD
TMTYRYREEKGFIASLVIDNNTFTGHHLKALASREFPDVDTLRAAKRFTRIALKPYLGGKPLKSRELFRQFMPARKARAD
NTNND

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

Organism=Escherichia coli, GI2367140, Length=239, Percent_Identity=89.5397489539749, Blast_Score=446, Evalue=1e-127,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 27434; Mature: 27434

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVRF
CCCHHEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCHHHHHHCCCCCCHHHHHHHEE
GGRGEVKTLRSAEAVSLALPLSGITLYSGLYVNELISRVLEHETRFSELFFDYLHCIQAL
CCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGASGSPEPALRRFELALLGHLGYGVDFLHCAGSGEPVDDTMTYRYREEKGFIASLVIDN
HCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHEEEECCCCEEEEEEEEC
NTFTGHHLKALASREFPDVDTLRAAKRFTRIALKPYLGGKPLKSRELFRQFMPARKARAD
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
NTNND
CCCCC
>Mature Secondary Structure
MDGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVRF
CCCHHEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCHHHHHHCCCCCCHHHHHHHEE
GGRGEVKTLRSAEAVSLALPLSGITLYSGLYVNELISRVLEHETRFSELFFDYLHCIQAL
CCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGASGSPEPALRRFELALLGHLGYGVDFLHCAGSGEPVDDTMTYRYREEKGFIASLVIDN
HCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHEEEECCCCEEEEEEEEC
NTFTGHHLKALASREFPDVDTLRAAKRFTRIALKPYLGGKPLKSRELFRQFMPARKARAD
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
NTNND
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA