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The map label for this gene is yfeR [H]

Identifier: 238895880

GI number: 238895880

Start: 3828097

End: 3829023

Strand: Reverse

Name: yfeR [H]

Synonym: KP1_4002

Alternate gene names: 238895880

Gene position: 3829023-3828097 (Counterclockwise)

Preceding gene: 238895882

Following gene: 238895879

Centisome position: 72.95

GC content: 59.33

Gene sequence:

>927_bases
ATGAATTACTCTCTGCGTCAGTTAAAAGTATTTGTCACCGTCGCCCGGGCCAGAAGCTTCAGCCGGGCAGGGGAGATGAT
TGGCTTAAGTCAGTCGGCCGTCAGCCATAGCGTCAAGGAGCTGGAGCATCAGACCGGCGTCCGTCTGCTCGACCGTACTA
CTCGCGAAGTGGTGCTCACCGAGGCGGGTCAGCAGCTGGCGGGCAGGCTGGAACGTTTGCTTGATGAGTTGACGATTACC
CTGCGTGACGCCGGGCGGGTAGGCCAGCAGCTGAGCGGCACCGTCAAGGTCGCCGCCAGTCAGACGATTTCCGCCCACCT
TATTCCGCAGTGTATTGCTCACAGCAATCGTCGTTATCCCGATATCGATTTTGTGCTGCACGATCGGCCCCAGCAGTGGG
TGCTGGAGAGTATCCGCCAGGGGGAAGTGGATTTTGGCATCGTGATTGATCCGGGCCCGGCGGCAGACCTTCAGTGTGAA
GTGGTTCTGGCGGAACCATTTTTGCTGCTCTGCCGGGAGGATCATCCTTTTGCCAGCCTGACAGAAGTGCCGTGGCAGGC
GCTGCAGGATGAAAGGCTAATCCTGCAGGATTATGCGTCCGGCAGCCGCCCGCTGATCGATGCGGCCCTCAGCAGACTGG
CTATCCGGGCGAACATCGTCCAGGAGATTGGCCACCCGGCAACGCTGTTTCCGATGGTAGAATCGGGAATTGGCATCAGC
GTTCTGCCGGCGCTGGCGCTACCGTTACCGCAGGGGAGCCATCTGACGGTGAAACGGCTGACTCCGGTGATGGAGCGGCA
GCTGATGCTGGCATGCAGGAAAAATCGCTCGCTGTCGACCGCCGCTCAGGCGTTATGGGAAATTGTGCGTGAAGAAGGGG
AGAATTTAACCGCCGCCAGGGTTGAAGATCCGCTATATCAGCGCTGA

Upstream 100 bases:

>100_bases
GAAAAGTTTCATAAACGCTCCTGAAAAGAGATGCGCTATTGTGCTTTTTTTCATTTGAGAAATAAAATTGATTTATTGCA
TCTATTCATGAATAAAAAAG

Downstream 100 bases:

>100_bases
CAGGGGGGATTGCTGCGGAGGGACTCGTGGCAGGGCCATGTTCCGCGCATAGCAAAAAGGCGCCTTTAGGGCGCCTTTTT
ACATTGGTGGGTCGTGCAGG

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MNYSLRQLKVFVTVARARSFSRAGEMIGLSQSAVSHSVKELEHQTGVRLLDRTTREVVLTEAGQQLAGRLERLLDELTIT
LRDAGRVGQQLSGTVKVAASQTISAHLIPQCIAHSNRRYPDIDFVLHDRPQQWVLESIRQGEVDFGIVIDPGPAADLQCE
VVLAEPFLLLCREDHPFASLTEVPWQALQDERLILQDYASGSRPLIDAALSRLAIRANIVQEIGHPATLFPMVESGIGIS
VLPALALPLPQGSHLTVKRLTPVMERQLMLACRKNRSLSTAAQALWEIVREEGENLTAARVEDPLYQR

Sequences:

>Translated_308_residues
MNYSLRQLKVFVTVARARSFSRAGEMIGLSQSAVSHSVKELEHQTGVRLLDRTTREVVLTEAGQQLAGRLERLLDELTIT
LRDAGRVGQQLSGTVKVAASQTISAHLIPQCIAHSNRRYPDIDFVLHDRPQQWVLESIRQGEVDFGIVIDPGPAADLQCE
VVLAEPFLLLCREDHPFASLTEVPWQALQDERLILQDYASGSRPLIDAALSRLAIRANIVQEIGHPATLFPMVESGIGIS
VLPALALPLPQGSHLTVKRLTPVMERQLMLACRKNRSLSTAAQALWEIVREEGENLTAARVEDPLYQR
>Mature_308_residues
MNYSLRQLKVFVTVARARSFSRAGEMIGLSQSAVSHSVKELEHQTGVRLLDRTTREVVLTEAGQQLAGRLERLLDELTIT
LRDAGRVGQQLSGTVKVAASQTISAHLIPQCIAHSNRRYPDIDFVLHDRPQQWVLESIRQGEVDFGIVIDPGPAADLQCE
VVLAEPFLLLCREDHPFASLTEVPWQALQDERLILQDYASGSRPLIDAALSRLAIRANIVQEIGHPATLFPMVESGIGIS
VLPALALPLPQGSHLTVKRLTPVMERQLMLACRKNRSLSTAAQALWEIVREEGENLTAARVEDPLYQR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=307, Percent_Identity=79.1530944625407, Blast_Score=476, Evalue=1e-136,
Organism=Escherichia coli, GI145693105, Length=310, Percent_Identity=31.9354838709677, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI157672245, Length=283, Percent_Identity=27.5618374558304, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=28.7449392712551, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1790399, Length=295, Percent_Identity=29.1525423728814, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788481, Length=249, Percent_Identity=30.1204819277108, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788297, Length=244, Percent_Identity=29.5081967213115, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787128, Length=122, Percent_Identity=39.344262295082, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI2367136, Length=239, Percent_Identity=25.9414225941423, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788887, Length=244, Percent_Identity=27.8688524590164, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1787601, Length=174, Percent_Identity=30.4597701149425, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081904, Length=175, Percent_Identity=30.2857142857143, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788706, Length=173, Percent_Identity=28.9017341040462, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786401, Length=126, Percent_Identity=34.1269841269841, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789173, Length=167, Percent_Identity=30.5389221556886, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788296, Length=249, Percent_Identity=26.1044176706827, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1789506, Length=293, Percent_Identity=23.5494880546075, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787589, Length=120, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786713, Length=273, Percent_Identity=26.7399267399267, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787530, Length=249, Percent_Identity=22.0883534136546, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790208, Length=300, Percent_Identity=25.3333333333333, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI145693193, Length=132, Percent_Identity=31.8181818181818, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34153; Mature: 34153

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYSLRQLKVFVTVARARSFSRAGEMIGLSQSAVSHSVKELEHQTGVRLLDRTTREVVLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
EAGQQLAGRLERLLDELTITLRDAGRVGQQLSGTVKVAASQTISAHLIPQCIAHSNRRYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHCCCCCCC
DIDFVLHDRPQQWVLESIRQGEVDFGIVIDPGPAADLQCEVVLAEPFLLLCREDHPFASL
CCEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCCEEEEECCCCCCHHH
TEVPWQALQDERLILQDYASGSRPLIDAALSRLAIRANIVQEIGHPATLFPMVESGIGIS
HHCCHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCHH
VLPALALPLPQGSHLTVKRLTPVMERQLMLACRKNRSLSTAAQALWEIVREEGENLTAAR
HHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHH
VEDPLYQR
CCCCCCCC
>Mature Secondary Structure
MNYSLRQLKVFVTVARARSFSRAGEMIGLSQSAVSHSVKELEHQTGVRLLDRTTREVVLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
EAGQQLAGRLERLLDELTITLRDAGRVGQQLSGTVKVAASQTISAHLIPQCIAHSNRRYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHCCCCCCC
DIDFVLHDRPQQWVLESIRQGEVDFGIVIDPGPAADLQCEVVLAEPFLLLCREDHPFASL
CCEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCCEEEEECCCCCCHHH
TEVPWQALQDERLILQDYASGSRPLIDAALSRLAIRANIVQEIGHPATLFPMVESGIGIS
HHCCHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCHH
VLPALALPLPQGSHLTVKRLTPVMERQLMLACRKNRSLSTAAQALWEIVREEGENLTAAR
HHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHH
VEDPLYQR
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]