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The map label for this gene is dedA [H]

Identifier: 238895837

GI number: 238895837

Start: 3780752

End: 3781411

Strand: Reverse

Name: dedA [H]

Synonym: KP1_3956

Alternate gene names: 238895837

Gene position: 3781411-3780752 (Counterclockwise)

Preceding gene: 238895838

Following gene: 238895836

Centisome position: 72.05

GC content: 54.7

Gene sequence:

>660_bases
ATGGACTTGATTCACTTTTTAATTGATTTCATCCTGCATATTGATGTGCACCTTGCCGAACTGGTTGCCCAGTATGGCGT
CTGGGTTTATGCCATTCTGTTTTTGATTCTGTTCTGCGAAACCGGGCTGGTGGTGACGCCATTCCTGCCGGGCGATTCCC
TGCTGTTCGTCGCGGGCGCGCTCTCGGCCTTGCCAACCAACGATCTCAATGTCCACCTGATGGTACTGCTGATGGTCATC
GCGGCCATCGTCGGCGATGCGGTCAACTACACCATTGGCCGGCTGTTCGGCGAAAAGCTGTTCAGCAATCCGAACTCAAA
GATATTCCGTCGCAGCTATCTGGATAAAACCCACAGCTTTTACGAACGTCACGGCGGGAAAACCATTATCCTGGCGCGCT
TTGTGCCGATAGTCCGAACCTTCGCGCCGTTTGTGGCGGGAATGGGGCATATGTCCTATCGTCATTTTGCAGCCTATAAC
GTGGTTGGGGCGCTGCTGTGGGTGCTGCTGTTCACCTATGCCGGCTATCTGTTTGGCGATTTGCCGGTGGTGCAGGAGAA
TCTGAAGCTGCTGATCGTGGCGATCATCGTCCTCTCCGTCCTGCCGGGTGTGATTGAGATCATCCGCCATAAGCGGGCGG
CGTCAAAGCAGGCGAAGTAG

Upstream 100 bases:

>100_bases
TGGTGTCGGTGGATTACCCGGCCCACTATGATTTACCGGTGCTGCCAATGGGCCCGCTGTTTCTGGCGGACTAATAGGGT
CATTAAGGGTAAAGACAAAC

Downstream 100 bases:

>100_bases
TTTAGCCTGTGTTGCGCGTGACGGTGCAGAGCGTCACGCGCAGCGGTTTGACCACTTTTTTATCCCATGTTCCGGGATGA
TATGATTTAATGTGCAACAT

Product: hypothetical protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MDLIHFLIDFILHIDVHLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALSALPTNDLNVHLMVLLMVI
AAIVGDAVNYTIGRLFGEKLFSNPNSKIFRRSYLDKTHSFYERHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYN
VVGALLWVLLFTYAGYLFGDLPVVQENLKLLIVAIIVLSVLPGVIEIIRHKRAASKQAK

Sequences:

>Translated_219_residues
MDLIHFLIDFILHIDVHLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALSALPTNDLNVHLMVLLMVI
AAIVGDAVNYTIGRLFGEKLFSNPNSKIFRRSYLDKTHSFYERHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYN
VVGALLWVLLFTYAGYLFGDLPVVQENLKLLIVAIIVLSVLPGVIEIIRHKRAASKQAK
>Mature_219_residues
MDLIHFLIDFILHIDVHLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALSALPTNDLNVHLMVLLMVI
AAIVGDAVNYTIGRLFGEKLFSNPNSKIFRRSYLDKTHSFYERHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYN
VVGALLWVLLFTYAGYLFGDLPVVQENLKLLIVAIIVLSVLPGVIEIIRHKRAASKQAK

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=210, Percent_Identity=90.9523809523809, Blast_Score=393, Evalue=1e-111,
Organism=Escherichia coli, GI1789481, Length=155, Percent_Identity=35.4838709677419, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789384, Length=192, Percent_Identity=30.7291666666667, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786252, Length=185, Percent_Identity=29.1891891891892, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24428; Mature: 24428

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLIHFLIDFILHIDVHLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHH
LSALPTNDLNVHLMVLLMVIAAIVGDAVNYTIGRLFGEKLFSNPNSKIFRRSYLDKTHSF
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
YERHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVVGALLWVLLFTYAGYLFGD
HHHCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LPVVQENLKLLIVAIIVLSVLPGVIEIIRHKRAASKQAK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDLIHFLIDFILHIDVHLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHH
LSALPTNDLNVHLMVLLMVIAAIVGDAVNYTIGRLFGEKLFSNPNSKIFRRSYLDKTHSF
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
YERHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVVGALLWVLLFTYAGYLFGD
HHHCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LPVVQENLKLLIVAIIVLSVLPGVIEIIRHKRAASKQAK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]