Click here to switch to the map view.

The map label for this gene is dedD [H]

Identifier: 238895834

GI number: 238895834

Start: 3777623

End: 3778312

Strand: Reverse

Name: dedD [H]

Synonym: KP1_3952

Alternate gene names: 238895834

Gene position: 3778312-3777623 (Counterclockwise)

Preceding gene: 238895835

Following gene: 238895833

Centisome position: 71.99

GC content: 62.46

Gene sequence:

>690_bases
GTGGCGAGTAAGTTTCAGAACCGTTTAGTCGGGACAATCGTGCTGGTGGCGCTGGGGGTGATTATCCTGCCAGGGCTGCT
GGACGGGCAGAAAAAGCATTACCAGGATGAGTTTGCCGCGATCCCGCTGGTACCGAAACCAGGCGATCGCGATGAACCGG
ATATGTTGCCGGCGGCAACCCAGGCGTTGCCTTCGCAACCGCCGGAAGGGGCGGCGGAAGAGGTGCGGGCGGGCGATGCC
GCCGCGCCATCGTTAGATCCATCGCGTATTCCGGTGAACAGCAACAGCTTCGATGACGTTCAGGAGCCGGTGGTGGCCGC
GAAACCGCAGCCCAAGCCGCAGCCGAAACCGCAGCCGCAACAGCAGGCCTCGACGCCAACGCCGCCGCCGGCTAAGCCAC
AGCAGCAACAGCCACCGCAGCAGCAGGCGGCCCTGCCGGCGCCGACCGGCAAAGCCTATGTGGTTCAGCTGGGCGCGTTG
AAGAACGCCGATAAGGTGAATGAGATTGTCGGTAAACTGCGGGCCTCGGGTTTCAAAGTCTATACGTCGCCTTCGACGCC
GGTACAGGGTAAAATTACCCGCATCCTCGTCGGCCCGGATGCGTCAAAAGACAAGCTGAAAGGCCAGCTGGGCGATCTGC
AGCAGATCTCCGGGCTTAGCGGGGTGGTGATGGGCTTCACCCCGAACTGA

Upstream 100 bases:

>100_bases
GCGGCCATGGCTGACGCTAAAGTGGAAGATACCGTGCTGGTGTGTGGTTCGTTTCACACCGTAGCGCAGGTTATGGAAGA
GATAGACGCGGGGAGAATCG

Downstream 100 bases:

>100_bases
TGGTTTTTTCCGCCATGCGGAGAGAACGTGGCGGGGAGAAACGCCCCGCAAACCCTGTCTCAGCCGCCCTGAAGAGGCGA
AAGGCAGTCTGGCGTTGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MASKFQNRLVGTIVLVALGVIILPGLLDGQKKHYQDEFAAIPLVPKPGDRDEPDMLPAATQALPSQPPEGAAEEVRAGDA
AAPSLDPSRIPVNSNSFDDVQEPVVAAKPQPKPQPKPQPQQQASTPTPPPAKPQQQQPPQQQAALPAPTGKAYVVQLGAL
KNADKVNEIVGKLRASGFKVYTSPSTPVQGKITRILVGPDASKDKLKGQLGDLQQISGLSGVVMGFTPN

Sequences:

>Translated_229_residues
MASKFQNRLVGTIVLVALGVIILPGLLDGQKKHYQDEFAAIPLVPKPGDRDEPDMLPAATQALPSQPPEGAAEEVRAGDA
AAPSLDPSRIPVNSNSFDDVQEPVVAAKPQPKPQPKPQPQQQASTPTPPPAKPQQQQPPQQQAALPAPTGKAYVVQLGAL
KNADKVNEIVGKLRASGFKVYTSPSTPVQGKITRILVGPDASKDKLKGQLGDLQQISGLSGVVMGFTPN
>Mature_228_residues
ASKFQNRLVGTIVLVALGVIILPGLLDGQKKHYQDEFAAIPLVPKPGDRDEPDMLPAATQALPSQPPEGAAEEVRAGDAA
APSLDPSRIPVNSNSFDDVQEPVVAAKPQPKPQPKPQPQQQASTPTPPPAKPQQQQPPQQQAALPAPTGKAYVVQLGALK
NADKVNEIVGKLRASGFKVYTSPSTPVQGKITRILVGPDASKDKLKGQLGDLQQISGLSGVVMGFTPN

Specific function: Unknown

COG id: COG3147

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082083, Length=229, Percent_Identity=73.7991266375546, Blast_Score=310, Evalue=5e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007730 [H]

Pfam domain/function: PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 24056; Mature: 23925

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKFQNRLVGTIVLVALGVIILPGLLDGQKKHYQDEFAAIPLVPKPGDRDEPDMLPAAT
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
QALPSQPPEGAAEEVRAGDAAAPSLDPSRIPVNSNSFDDVQEPVVAAKPQPKPQPKPQPQ
HHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCH
QQASTPTPPPAKPQQQQPPQQQAALPAPTGKAYVVQLGALKNADKVNEIVGKLRASGFKV
HHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEE
YTSPSTPVQGKITRILVGPDASKDKLKGQLGDLQQISGLSGVVMGFTPN
EECCCCCCCCEEEEEEECCCCCHHHHHHHHCCHHHHCCCCCEEEECCCC
>Mature Secondary Structure 
ASKFQNRLVGTIVLVALGVIILPGLLDGQKKHYQDEFAAIPLVPKPGDRDEPDMLPAAT
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
QALPSQPPEGAAEEVRAGDAAAPSLDPSRIPVNSNSFDDVQEPVVAAKPQPKPQPKPQPQ
HHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCH
QQASTPTPPPAKPQQQQPPQQQAALPAPTGKAYVVQLGALKNADKVNEIVGKLRASGFKV
HHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEE
YTSPSTPVQGKITRILVGPDASKDKLKGQLGDLQQISGLSGVVMGFTPN
EECCCCCCCCEEEEEEECCCCCHHHHHHHHCCHHHHCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3040734; 9205837; 9278503 [H]