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The map label for this gene is yfcD [H]

Identifier: 238895818

GI number: 238895818

Start: 3765542

End: 3766093

Strand: Reverse

Name: yfcD [H]

Synonym: KP1_3935

Alternate gene names: 238895818

Gene position: 3766093-3765542 (Counterclockwise)

Preceding gene: 238895819

Following gene: 238895815

Centisome position: 71.76

GC content: 58.15

Gene sequence:

>552_bases
ATGGCGGAACAGAATCATTTGGCAAGCACAGAATGGGTCGATATTGTTAATGAAAACAATGAGGTGATAGCACAGTCCAG
CCGCGAGCAAATGCGCGCGCAGTGCCTGCGCCACCGGGCGACCTATATCGTCGTTCATGACGGAATGGGGAAAATTCTGG
TGCAGCGACGCACCGAGACAAAAGACTTTCATCCGGGCATGCTGGATGCCACCGCTGGCGGCGTCGTGCAGGCTGATGAG
CAGCTGCTGGAATCGGCCCGTCGCGAGGCGGAAGAGGAGTTAGGCATCGCCGGGGTGCCGTTTGCCGATCACGGCCAGTT
TTATTACGAAGACAAATTCTGCCGCGTCTGGGGAAGTCTGTTTAGCTGCGTCTCCCACGGGCCGTTCGCCCTGCAGGAAG
AAGAGGTCAGCGAGGTGTGCTGGTTAACGCCGGAAGAGATCACCGCCCGCTGCGATGAGTTCACGCCGGACTCCCTGAAA
GCGCTGGCGCTGTGGATGACCCGCAACGCCGGTAATGAGTATGATGATGCGGAAGAGAGCGAGCGCGAATAA

Upstream 100 bases:

>100_bases
CAATGATAATCAGGTTATTGCAGAGGTTGCAATTTACCCGTAATTTAGCCCTCAATCATAAAGACGCGCCGCGAGAGCGC
ATTTAAAGTAAGGTTTCCTG

Downstream 100 bases:

>100_bases
AGATCGCAAACGCGCGACAGCAATCGTCGCTCGCCTCCTGACGACAAAAAGGCAGCCATTCGGCTGCCTTTTGCTTTGAC
CACAGCGGCAGATTACTTCT

Product: putative NUDIX hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MAEQNHLASTEWVDIVNENNEVIAQSSREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFHPGMLDATAGGVVQADE
QLLESARREAEEELGIAGVPFADHGQFYYEDKFCRVWGSLFSCVSHGPFALQEEEVSEVCWLTPEEITARCDEFTPDSLK
ALALWMTRNAGNEYDDAEESERE

Sequences:

>Translated_183_residues
MAEQNHLASTEWVDIVNENNEVIAQSSREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFHPGMLDATAGGVVQADE
QLLESARREAEEELGIAGVPFADHGQFYYEDKFCRVWGSLFSCVSHGPFALQEEEVSEVCWLTPEEITARCDEFTPDSLK
ALALWMTRNAGNEYDDAEESERE
>Mature_182_residues
AEQNHLASTEWVDIVNENNEVIAQSSREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFHPGMLDATAGGVVQADEQ
LLESARREAEEELGIAGVPFADHGQFYYEDKFCRVWGSLFSCVSHGPFALQEEEVSEVCWLTPEEITARCDEFTPDSLKA
LALWMTRNAGNEYDDAEESERE

Specific function: Unknown

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Escherichia coli, GI1788637, Length=179, Percent_Identity=89.9441340782123, Blast_Score=314, Evalue=2e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: 3.6.-.- [C]

Molecular weight: Translated: 20771; Mature: 20640

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEQNHLASTEWVDIVNENNEVIAQSSREQMRAQCLRHRATYIVVHDGMGKILVQRRTET
CCCCCCCCCHHHHHEECCCCCEEHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCC
KDFHPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFADHGQFYYEDKFCRVWGSL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHH
FSCVSHGPFALQEEEVSEVCWLTPEEITARCDEFTPDSLKALALWMTRNAGNEYDDAEES
HHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
ERE
CCC
>Mature Secondary Structure 
AEQNHLASTEWVDIVNENNEVIAQSSREQMRAQCLRHRATYIVVHDGMGKILVQRRTET
CCCCCCCCHHHHHEECCCCCEEHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCC
KDFHPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFADHGQFYYEDKFCRVWGSL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHH
FSCVSHGPFALQEEEVSEVCWLTPEEITARCDEFTPDSLKALALWMTRNAGNEYDDAEES
HHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
ERE
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]