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The map label for this gene is yulB [H]

Identifier: 238895749

GI number: 238895749

Start: 3683195

End: 3684001

Strand: Direct

Name: yulB [H]

Synonym: KP1_3853

Alternate gene names: 238895749

Gene position: 3683195-3684001 (Clockwise)

Preceding gene: 238895747

Following gene: 238895751

Centisome position: 70.18

GC content: 63.2

Gene sequence:

>807_bases
ATGCATAATCGTGCACAAACAAGATCATTCGATGAAGGAAAACCGATGCTCGCCAGTCAGAGAAAACAGCAGATCCTCCA
GATCCTCACCGAGGAAAAACAGGTGATGTCCGGGGAGCTAAGCCAGCGGTTTAACGTCTCCGAGGACTCCATTCGCCGCG
ATCTGCGCGAGCTGGCGGCGGAGGGAAAACTGCAGCGGGTCCATGGCGGGGCATTGCCGGTATCCGCCGCCATTGCGCCA
ATTGAAACGCGCAAAAGCGTGCAGATCGCCTCCAAGCAGGCGGTCGCCCGCGCCGCCGCCGCCCTGATCCAGCCGGGACA
GGTGGTGATTGTCGATGGCGGCACCACCACCGCGGCGATGATCGGCTTTTTACCCGCCGACCTCAGCTGCACGGTGGTCA
CCCACAGTCCGGGCATCGCCGTGGCGCTGGTGGACCACCCGCGAATCGAGGTGATCCTGCTCGGCGGCAGAGTATTTAAA
CATTCGGTTGTCGCCGTCGGCGCCGAGACGCTGGCGGGAATGGCGCGGATCAACGCCGATCTGTTCTTTATGGGGGTGAC
CGGCGTCCACCCGCGGGCGGGTTTCACCACCGGTGATTACGAAGAGGCAGGCATCAAGCGCGCGCTGACGGCCAGGGCGG
CAGAAACCGTGGTAATGGCCTCCCGGGAGAAGCTCAACGCCGCGTCGGCCTTTGCCATCGGCGAGCTGAGCCTCGCCAGT
ACGCTGATTGTCGATGGAGAACCCGACGCCGCGCTGCGCCAACAGTTGTTGCAGAGCGGCGTGGAGATCGTCCCCGTTCA
GCGGTAG

Upstream 100 bases:

>100_bases
GTACCAGTTATCCGAGAGCAGCGTCTCGCGAACGTGGCGGACGTGCGGTGCATGTGTTTGCATGTTATTTCCCCTTTGAG
GTGACAGCAGGCACCATAAC

Downstream 100 bases:

>100_bases
CGCCGCCGGGGCGCAGGGCTTAATTGCCGCCTGACGTCCGGCGCTGCAGCTGGTCGCGCAGATTCGGCGGGGTACCCTTA
ATGGTCAGGGTATCAGTGGC

Product: putative DeoR-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MHNRAQTRSFDEGKPMLASQRKQQILQILTEEKQVMSGELSQRFNVSEDSIRRDLRELAAEGKLQRVHGGALPVSAAIAP
IETRKSVQIASKQAVARAAAALIQPGQVVIVDGGTTTAAMIGFLPADLSCTVVTHSPGIAVALVDHPRIEVILLGGRVFK
HSVVAVGAETLAGMARINADLFFMGVTGVHPRAGFTTGDYEEAGIKRALTARAAETVVMASREKLNAASAFAIGELSLAS
TLIVDGEPDAALRQQLLQSGVEIVPVQR

Sequences:

>Translated_268_residues
MHNRAQTRSFDEGKPMLASQRKQQILQILTEEKQVMSGELSQRFNVSEDSIRRDLRELAAEGKLQRVHGGALPVSAAIAP
IETRKSVQIASKQAVARAAAALIQPGQVVIVDGGTTTAAMIGFLPADLSCTVVTHSPGIAVALVDHPRIEVILLGGRVFK
HSVVAVGAETLAGMARINADLFFMGVTGVHPRAGFTTGDYEEAGIKRALTARAAETVVMASREKLNAASAFAIGELSLAS
TLIVDGEPDAALRQQLLQSGVEIVPVQR
>Mature_268_residues
MHNRAQTRSFDEGKPMLASQRKQQILQILTEEKQVMSGELSQRFNVSEDSIRRDLRELAAEGKLQRVHGGALPVSAAIAP
IETRKSVQIASKQAVARAAAALIQPGQVVIVDGGTTTAAMIGFLPADLSCTVVTHSPGIAVALVDHPRIEVILLGGRVFK
HSVVAVGAETLAGMARINADLFFMGVTGVHPRAGFTTGDYEEAGIKRALTARAAETVVMASREKLNAASAFAIGELSLAS
TLIVDGEPDAALRQQLLQSGVEIVPVQR

Specific function: Probable Repressor For The Aga Operon For N-Acetyl Galactosamine Transport And Metabolism. [C]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=253, Percent_Identity=30.4347826086957, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789829, Length=249, Percent_Identity=27.710843373494, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI87082344, Length=245, Percent_Identity=28.9795918367347, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787540, Length=246, Percent_Identity=30.8943089430894, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1789059, Length=251, Percent_Identity=29.8804780876494, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1789170, Length=229, Percent_Identity=28.3842794759825, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI226510968, Length=242, Percent_Identity=32.2314049586777, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1788069, Length=238, Percent_Identity=27.7310924369748, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1787063, Length=233, Percent_Identity=26.1802575107296, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790753, Length=251, Percent_Identity=24.3027888446215, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1790635, Length=254, Percent_Identity=23.2283464566929, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28389; Mature: 28389

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNRAQTRSFDEGKPMLASQRKQQILQILTEEKQVMSGELSQRFNVSEDSIRRDLRELAA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EGKLQRVHGGALPVSAAIAPIETRKSVQIASKQAVARAAAALIQPGQVVIVDGGTTTAAM
CCCEEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHH
IGFLPADLSCTVVTHSPGIAVALVDHPRIEVILLGGRVFKHSVVAVGAETLAGMARINAD
HHHCCCCCEEEEEEECCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCC
LFFMGVTGVHPRAGFTTGDYEEAGIKRALTARAAETVVMASREKLNAASAFAIGELSLAS
EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHEEE
TLIVDGEPDAALRQQLLQSGVEIVPVQR
EEEECCCCCHHHHHHHHHCCCCEEECCC
>Mature Secondary Structure
MHNRAQTRSFDEGKPMLASQRKQQILQILTEEKQVMSGELSQRFNVSEDSIRRDLRELAA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EGKLQRVHGGALPVSAAIAPIETRKSVQIASKQAVARAAAALIQPGQVVIVDGGTTTAAM
CCCEEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHH
IGFLPADLSCTVVTHSPGIAVALVDHPRIEVILLGGRVFKHSVVAVGAETLAGMARINAD
HHHCCCCCEEEEEEECCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCC
LFFMGVTGVHPRAGFTTGDYEEAGIKRALTARAAETVVMASREKLNAASAFAIGELSLAS
EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHEEE
TLIVDGEPDAALRQQLLQSGVEIVPVQR
EEEECCCCCHHHHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]