Click here to switch to the map view.

The map label for this gene is dppA [H]

Identifier: 238895659

GI number: 238895659

Start: 3578677

End: 3580398

Strand: Reverse

Name: dppA [H]

Synonym: KP1_3755

Alternate gene names: 238895659

Gene position: 3580398-3578677 (Counterclockwise)

Preceding gene: 238895660

Following gene: 238895658

Centisome position: 68.22

GC content: 58.19

Gene sequence:

>1722_bases
ATGGCGCTGCGCTTATCGAGCCTGCGGCCCGGTAGACCGGATAAGCCGAAAATGCCGCCATCCGGCAACATGTACCCTAC
AGTACAGGCAAACAGAGATATGAAAAAAACCTCCTTACTGGGAGCGTGTATTCTCGCGCTCGCCATGTCGATGGGGAGCG
GGGAGGCGGTGGCGAAAACGCCGCCCGACCAGCTGATCATCGGCATGAATATGAATAACCTGCTCACCCTTGACCCGGCG
GCGATGACCGGTAACGAAGTGGTGGGGATCGTGGTCAACCTCTACGACTCGCTGGTGGAGCTTGACCCTGAGCAGCTCAC
CACCGTCAGGCCCGCGCTGGCGAAATCCTGGGATATCAGCCCCGACGGCAAAACCCTGACCTTTCATCTGCGCGATGACG
TTAAGTTTCACTCCGGCAACCCGCTGACCTCCGCCGACGTCGTGTGGTCAATGCGGCGCATCCTGCACCTCAACCTGGCC
CAGGCCTCAGTATGGAAATCCTATGGCTTCAGTAAGAAAAATATCGACAGCCAGGTCAGTGCGCCGGGCCGCTTCACGGT
GCAAATCGTATTACCCAAAGATAACGATCCGCAGCTGGTGATTTACTCGCTGGCGGCGCTGGGCAACCTCGGAGTGCTGG
ACAGTAAAACGGTGCAAAGCCACCAGCAGGATAACGACTGGGGTAACCGCTGGCTAACCACCCATGAAGCCGGTTCCGGG
CCGTTTATCCTCGAAACCTGGCAGGCGAAAGATGTGCTGCGCATGAAGCGTAACCCTGACTACTGGCGCGGCGAGGCGAA
AATGAGCCGCGTGGTACTGCGTCATTTCCAGGAGTCGCAAACTCTGCGCCTGATGATCGAAAAAGGCGACCTTGATATTG
CCAACAATATGGCGGTTTCCGATATCAACGCCCTGCGCAGCGATCCGCAGCTGACCGTCGATGCGGTGCAGCGCGGCACC
ATGTACTACGTGGCGATGAGCATGAAAGAGGCGCACTTCGCCAATCCGAAAGTGCGCGAGGCGGTGCGCTTTCTGATTGA
TTACCAGGGTATCAATAAAGCGCTGATGCCGGGCTATGGCGTGCTGCACCAGCGGCCTATCAAAGCGGGAATGCCGTCCA
CGCTACCCGATCCCGGCTACAGGCTGGATGTGGCGCGGGCGAAAAAGCTGCTGGCGGAAGCGGGATATCCCAACGGCTTT
GATACCACGCTGCGGGTACTCTCCGATCAGCCATTTCTTAACATCGCTATCGCCGTGCAGTCGACGCTGATGCAGGCGGG
GATTAACGCCAAAATCATCACCGGCACTGGTAACCAGATCTACGGCGCAATGCGCGAGCGTAAATTTGACCTGCTGGTAG
GTCGCGGCGGCAGCGGGATGGAGCCGCATCCGCACTCCAGCCTGCGCGCGCTGGTCTATAACCCGGATAACAGCGATAAG
GCGCGCCTGACCAACTTCCAGGGCTGGCGTACCGGTTTTTACGACCCGCAACTGAATACGATGATTGACCAGGCCCTGCT
GGAACGCGATCCGCAAAAACAGGTGGCTGACTACCAGGCCATCCAGACACGCTACGACCAGCTGGTTCCGGCTTTAATTC
CGCTTTCACAGATGGTTGATTCGGTCGTCGTGCGCAACGAGGTACGGGAGTATCAGCCGCACCCCTCCGCCACCACTTTT
CTGCGTGACGTCTATAAAGTCCGCGAAGGAGAGAAAGGATGA

Upstream 100 bases:

>100_bases
TGCATTTGTCACAACGTCCGGGTCTCGGTGAAGACATTAATTTTGCGTATATCGAAGCCAATACCGTTAGCCACGACTGA
TTTAAAAAAATAAATACCCG

Downstream 100 bases:

>100_bases
GTACCGCAATCCTTGCGCCCGGCTCACGCGGCCGGCGCTTATCAAAACGGCTACTGCAGGTGGTGATTACACTGTTCGGC
CTGCTGCTGCTGACCTTTAC

Product: putative dipeptide ABC transport system periplasmic binding component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 573; Mature: 572

Protein sequence:

>573_residues
MALRLSSLRPGRPDKPKMPPSGNMYPTVQANRDMKKTSLLGACILALAMSMGSGEAVAKTPPDQLIIGMNMNNLLTLDPA
AMTGNEVVGIVVNLYDSLVELDPEQLTTVRPALAKSWDISPDGKTLTFHLRDDVKFHSGNPLTSADVVWSMRRILHLNLA
QASVWKSYGFSKKNIDSQVSAPGRFTVQIVLPKDNDPQLVIYSLAALGNLGVLDSKTVQSHQQDNDWGNRWLTTHEAGSG
PFILETWQAKDVLRMKRNPDYWRGEAKMSRVVLRHFQESQTLRLMIEKGDLDIANNMAVSDINALRSDPQLTVDAVQRGT
MYYVAMSMKEAHFANPKVREAVRFLIDYQGINKALMPGYGVLHQRPIKAGMPSTLPDPGYRLDVARAKKLLAEAGYPNGF
DTTLRVLSDQPFLNIAIAVQSTLMQAGINAKIITGTGNQIYGAMRERKFDLLVGRGGSGMEPHPHSSLRALVYNPDNSDK
ARLTNFQGWRTGFYDPQLNTMIDQALLERDPQKQVADYQAIQTRYDQLVPALIPLSQMVDSVVVRNEVREYQPHPSATTF
LRDVYKVREGEKG

Sequences:

>Translated_573_residues
MALRLSSLRPGRPDKPKMPPSGNMYPTVQANRDMKKTSLLGACILALAMSMGSGEAVAKTPPDQLIIGMNMNNLLTLDPA
AMTGNEVVGIVVNLYDSLVELDPEQLTTVRPALAKSWDISPDGKTLTFHLRDDVKFHSGNPLTSADVVWSMRRILHLNLA
QASVWKSYGFSKKNIDSQVSAPGRFTVQIVLPKDNDPQLVIYSLAALGNLGVLDSKTVQSHQQDNDWGNRWLTTHEAGSG
PFILETWQAKDVLRMKRNPDYWRGEAKMSRVVLRHFQESQTLRLMIEKGDLDIANNMAVSDINALRSDPQLTVDAVQRGT
MYYVAMSMKEAHFANPKVREAVRFLIDYQGINKALMPGYGVLHQRPIKAGMPSTLPDPGYRLDVARAKKLLAEAGYPNGF
DTTLRVLSDQPFLNIAIAVQSTLMQAGINAKIITGTGNQIYGAMRERKFDLLVGRGGSGMEPHPHSSLRALVYNPDNSDK
ARLTNFQGWRTGFYDPQLNTMIDQALLERDPQKQVADYQAIQTRYDQLVPALIPLSQMVDSVVVRNEVREYQPHPSATTF
LRDVYKVREGEKG
>Mature_572_residues
ALRLSSLRPGRPDKPKMPPSGNMYPTVQANRDMKKTSLLGACILALAMSMGSGEAVAKTPPDQLIIGMNMNNLLTLDPAA
MTGNEVVGIVVNLYDSLVELDPEQLTTVRPALAKSWDISPDGKTLTFHLRDDVKFHSGNPLTSADVVWSMRRILHLNLAQ
ASVWKSYGFSKKNIDSQVSAPGRFTVQIVLPKDNDPQLVIYSLAALGNLGVLDSKTVQSHQQDNDWGNRWLTTHEAGSGP
FILETWQAKDVLRMKRNPDYWRGEAKMSRVVLRHFQESQTLRLMIEKGDLDIANNMAVSDINALRSDPQLTVDAVQRGTM
YYVAMSMKEAHFANPKVREAVRFLIDYQGINKALMPGYGVLHQRPIKAGMPSTLPDPGYRLDVARAKKLLAEAGYPNGFD
TTLRVLSDQPFLNIAIAVQSTLMQAGINAKIITGTGNQIYGAMRERKFDLLVGRGGSGMEPHPHSSLRALVYNPDNSDKA
RLTNFQGWRTGFYDPQLNTMIDQALLERDPQKQVADYQAIQTRYDQLVPALIPLSQMVDSVVVRNEVREYQPHPSATTFL
RDVYKVREGEKG

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=505, Percent_Identity=27.3267326732673, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1787052, Length=484, Percent_Identity=25, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1789966, Length=555, Percent_Identity=25.045045045045, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787495, Length=570, Percent_Identity=24.0350877192982, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1789887, Length=536, Percent_Identity=24.2537313432836, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1787551, Length=554, Percent_Identity=23.2851985559567, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789397, Length=529, Percent_Identity=23.8185255198488, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI87081878, Length=555, Percent_Identity=23.0630630630631, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 63770; Mature: 63639

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALRLSSLRPGRPDKPKMPPSGNMYPTVQANRDMKKTSLLGACILALAMSMGSGEAVAKT
CCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEECC
PPDQLIIGMNMNNLLTLDPAAMTGNEVVGIVVNLYDSLVELDPEQLTTVRPALAKSWDIS
CCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
PDGKTLTFHLRDDVKFHSGNPLTSADVVWSMRRILHLNLAQASVWKSYGFSKKNIDSQVS
CCCCEEEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
APGRFTVQIVLPKDNDPQLVIYSLAALGNLGVLDSKTVQSHQQDNDWGNRWLTTHEAGSG
CCCEEEEEEEEECCCCCCEEEEEEHHHCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCCC
PFILETWQAKDVLRMKRNPDYWRGEAKMSRVVLRHFQESQTLRLMIEKGDLDIANNMAVS
CEEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHH
DINALRSDPQLTVDAVQRGTMYYVAMSMKEAHFANPKVREAVRFLIDYQGINKALMPGYG
HHHHHCCCCCEEHHHHHCCEEEEEEEEHHHHHCCCHHHHHHHHHHHHHCCCCHHHCCCCC
VLHQRPIKAGMPSTLPDPGYRLDVARAKKLLAEAGYPNGFDTTLRVLSDQPFLNIAIAVQ
HHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEHHHHH
STLMQAGINAKIITGTGNQIYGAMRERKFDLLVGRGGSGMEPHPHSSLRALVYNPDNSDK
HHHHHCCCCEEEEECCCCHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCC
ARLTNFQGWRTGFYDPQLNTMIDQALLERDPQKQVADYQAIQTRYDQLVPALIPLSQMVD
CEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVVVRNEVREYQPHPSATTFLRDVYKVREGEKG
HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ALRLSSLRPGRPDKPKMPPSGNMYPTVQANRDMKKTSLLGACILALAMSMGSGEAVAKT
CEECCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEECC
PPDQLIIGMNMNNLLTLDPAAMTGNEVVGIVVNLYDSLVELDPEQLTTVRPALAKSWDIS
CCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
PDGKTLTFHLRDDVKFHSGNPLTSADVVWSMRRILHLNLAQASVWKSYGFSKKNIDSQVS
CCCCEEEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
APGRFTVQIVLPKDNDPQLVIYSLAALGNLGVLDSKTVQSHQQDNDWGNRWLTTHEAGSG
CCCEEEEEEEEECCCCCCEEEEEEHHHCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCCC
PFILETWQAKDVLRMKRNPDYWRGEAKMSRVVLRHFQESQTLRLMIEKGDLDIANNMAVS
CEEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHH
DINALRSDPQLTVDAVQRGTMYYVAMSMKEAHFANPKVREAVRFLIDYQGINKALMPGYG
HHHHHCCCCCEEHHHHHCCEEEEEEEEHHHHHCCCHHHHHHHHHHHHHCCCCHHHCCCCC
VLHQRPIKAGMPSTLPDPGYRLDVARAKKLLAEAGYPNGFDTTLRVLSDQPFLNIAIAVQ
HHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEHHHHH
STLMQAGINAKIITGTGNQIYGAMRERKFDLLVGRGGSGMEPHPHSSLRALVYNPDNSDK
HHHHHCCCCEEEEECCCCHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCC
ARLTNFQGWRTGFYDPQLNTMIDQALLERDPQKQVADYQAIQTRYDQLVPALIPLSQMVD
CEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVVVRNEVREYQPHPSATTFLRDVYKVREGEKG
HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]