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The map label for this gene is dppB [H]

Identifier: 238895658

GI number: 238895658

Start: 3577643

End: 3578680

Strand: Reverse

Name: dppB [H]

Synonym: KP1_3754

Alternate gene names: 238895658

Gene position: 3578680-3577643 (Counterclockwise)

Preceding gene: 238895659

Following gene: 238895657

Centisome position: 68.18

GC content: 59.25

Gene sequence:

>1038_bases
ATGAGTACCGCAATCCTTGCGCCCGGCTCACGCGGCCGGCGCTTATCAAAACGGCTACTGCAGGTGGTGATTACACTGTT
CGGCCTGCTGCTGCTGACCTTTACCATTGGCCGCGTCATGCCCATCGACCCGGTGCTGGCGATTGTCGGCCCGGATGCTG
ACCAGAGTACCTATCAGCAGGTTTACCAGCAGCTGGGGTTTGATAAATCGCTGACCACCCAGTTTGGCATCTATTTCGTC
AACCTTTTGCACGGCGATCTGGGCAACGCGCTGCTGACCGGGAAACCGGTGGTGGACGATATTATCCGCGTCTTCCCGGC
CACCATGGAGCTGGCAACGATGGCAATTATTGTCGGCGCGGGTCTTGGTATTCCGCTGGGCGTGTTGGCGGCGGCGCGGC
GCAATAGCGTCTCCGATTATGTGGTACGCATTATCAGCCTGGCGGGCTACTCGACGCCGATCTTTTGGGTCGGGATGATG
GGGCTGCTGGTGTTCTATGCCTGGCTTGGCTGGGTAGGCGGCGCCGGGAGGGTAGATCTCGGGCTGGATGGTGTGGTGCC
GCGCCGCACCGGGCTGATGACCGTTGATGCGCTGCTGGCCGGCAACGGCCAGGTGTTCTGGAACGCCATTAATCATCTGA
TTCTTCCCGCCTCGCTGCTGGGTTTTCACTCGCTGGCTTATATCAGCCGTATGACCCGCAGCTTTATGCTGGCCCAGCTG
TCGCAGGAGTTCATTATTACCGCCCGGGTGAAAGGGCTGACCGAGCGCCAGGTTATCTGGAACCATGCGTTTCGTAACAT
CCTCGTGCAACTGCTGACGGTGGTGGCGCTGGCCTACGGCGCGCTGCTGGAAGGCGCGGTGCTGATTGAAACCGTCTTCT
CATGGCCGGGGTTTGGCTCCTACCTTACCGGAAGCTTGCTGCTGGGCGATATGAATGCGGTGATGGGCTGCGTGCTGCTG
GTGGGGGTGATCTTCGTGATGCTCAACCTGCTCTCCGACATGCTGTATCAATTCTTTGACCCGAGGACAAAATCATGA

Upstream 100 bases:

>100_bases
ATTCGGTCGTCGTGCGCAACGAGGTACGGGAGTATCAGCCGCACCCCTCCGCCACCACTTTTCTGCGTGACGTCTATAAA
GTCCGCGAAGGAGAGAAAGG

Downstream 100 bases:

>100_bases
CCGTTTCTCTGGATTCGCCGCTTTCGGGTGGTGCGGGCGAAGGCCGTCAGCGGCTGCAACGCGCGGCGGCGCGGGCCGTC
GGGTTTATCGGCAAAATGGC

Product: putative dipeptide ABC transport system permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MSTAILAPGSRGRRLSKRLLQVVITLFGLLLLTFTIGRVMPIDPVLAIVGPDADQSTYQQVYQQLGFDKSLTTQFGIYFV
NLLHGDLGNALLTGKPVVDDIIRVFPATMELATMAIIVGAGLGIPLGVLAAARRNSVSDYVVRIISLAGYSTPIFWVGMM
GLLVFYAWLGWVGGAGRVDLGLDGVVPRRTGLMTVDALLAGNGQVFWNAINHLILPASLLGFHSLAYISRMTRSFMLAQL
SQEFIITARVKGLTERQVIWNHAFRNILVQLLTVVALAYGALLEGAVLIETVFSWPGFGSYLTGSLLLGDMNAVMGCVLL
VGVIFVMLNLLSDMLYQFFDPRTKS

Sequences:

>Translated_345_residues
MSTAILAPGSRGRRLSKRLLQVVITLFGLLLLTFTIGRVMPIDPVLAIVGPDADQSTYQQVYQQLGFDKSLTTQFGIYFV
NLLHGDLGNALLTGKPVVDDIIRVFPATMELATMAIIVGAGLGIPLGVLAAARRNSVSDYVVRIISLAGYSTPIFWVGMM
GLLVFYAWLGWVGGAGRVDLGLDGVVPRRTGLMTVDALLAGNGQVFWNAINHLILPASLLGFHSLAYISRMTRSFMLAQL
SQEFIITARVKGLTERQVIWNHAFRNILVQLLTVVALAYGALLEGAVLIETVFSWPGFGSYLTGSLLLGDMNAVMGCVLL
VGVIFVMLNLLSDMLYQFFDPRTKS
>Mature_344_residues
STAILAPGSRGRRLSKRLLQVVITLFGLLLLTFTIGRVMPIDPVLAIVGPDADQSTYQQVYQQLGFDKSLTTQFGIYFVN
LLHGDLGNALLTGKPVVDDIIRVFPATMELATMAIIVGAGLGIPLGVLAAARRNSVSDYVVRIISLAGYSTPIFWVGMMG
LLVFYAWLGWVGGAGRVDLGLDGVVPRRTGLMTVDALLAGNGQVFWNAINHLILPASLLGFHSLAYISRMTRSFMLAQLS
QEFIITARVKGLTERQVIWNHAFRNILVQLLTVVALAYGALLEGAVLIETVFSWPGFGSYLTGSLLLGDMNAVMGCVLLV
GVIFVMLNLLSDMLYQFFDPRTKS

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=43.2926829268293, Blast_Score=232, Evalue=3e-62,
Organism=Escherichia coli, GI1789965, Length=332, Percent_Identity=40.9638554216867, Blast_Score=229, Evalue=3e-61,
Organism=Escherichia coli, GI1787053, Length=328, Percent_Identity=32.0121951219512, Blast_Score=177, Evalue=7e-46,
Organism=Escherichia coli, GI1789888, Length=280, Percent_Identity=31.0714285714286, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1787550, Length=275, Percent_Identity=30.1818181818182, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1787497, Length=332, Percent_Identity=28.0120481927711, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1788504, Length=292, Percent_Identity=25, Blast_Score=95, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37472; Mature: 37341

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAILAPGSRGRRLSKRLLQVVITLFGLLLLTFTIGRVMPIDPVLAIVGPDADQSTYQQ
CCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHH
VYQQLGFDKSLTTQFGIYFVNLLHGDLGNALLTGKPVVDDIIRVFPATMELATMAIIVGA
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GLGIPLGVLAAARRNSVSDYVVRIISLAGYSTPIFWVGMMGLLVFYAWLGWVGGAGRVDL
CCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GLDGVVPRRTGLMTVDALLAGNGQVFWNAINHLILPASLLGFHSLAYISRMTRSFMLAQL
CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQEFIITARVKGLTERQVIWNHAFRNILVQLLTVVALAYGALLEGAVLIETVFSWPGFGS
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
YLTGSLLLGDMNAVMGCVLLVGVIFVMLNLLSDMLYQFFDPRTKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
STAILAPGSRGRRLSKRLLQVVITLFGLLLLTFTIGRVMPIDPVLAIVGPDADQSTYQQ
CCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHH
VYQQLGFDKSLTTQFGIYFVNLLHGDLGNALLTGKPVVDDIIRVFPATMELATMAIIVGA
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GLGIPLGVLAAARRNSVSDYVVRIISLAGYSTPIFWVGMMGLLVFYAWLGWVGGAGRVDL
CCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GLDGVVPRRTGLMTVDALLAGNGQVFWNAINHLILPASLLGFHSLAYISRMTRSFMLAQL
CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQEFIITARVKGLTERQVIWNHAFRNILVQLLTVVALAYGALLEGAVLIETVFSWPGFGS
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
YLTGSLLLGDMNAVMGCVLLVGVIFVMLNLLSDMLYQFFDPRTKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]