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The map label for this gene is yddU [C]

Identifier: 238895576

GI number: 238895576

Start: 3478138

End: 3480048

Strand: Reverse

Name: yddU [C]

Synonym: KP1_3659

Alternate gene names: 238895576

Gene position: 3480048-3478138 (Counterclockwise)

Preceding gene: 238895577

Following gene: 238895574

Centisome position: 66.31

GC content: 53.01

Gene sequence:

>1911_bases
TTGAATCGAATACTCACGGCTATTATTTTGTCGTTATTTGTTGTCACCGGATATATTACTTATCTGGTGCATGAGCGACA
AAGTGAGTTGCAAAAATTTACCCGCTATACGGACTCGTGGTCAATGTCGCAGATGGTATCGGAATATATGCGGCTGGAGT
CTCGTCTGGCGGGAATGGCGATTGGGGCCGAAGGGGCGGACCACGATGAGGTGCGCCTGCGTCTTGAGATCATGATGAGC
CAGATCGAGCTTCTGCAGGAGGGCGATCTGGGTAAATTTATCAATAAAAGCGAGCAGCGGAAGACGGTGGTTGCGACGCT
GATTCGTAATCTTCATTTGCTCGATAAACAAGTTGATACCATGACGCCGGAGCAGGTCAGACAGATCCTGCCGGTGTTAA
GCGAGCTGGATGGTCCGCTGACCTCAATGGCCGCCGCCACCCTGACGCAAGATATCAATATCGTTAATATCACCCATGAT
AAAATCCAGCATCTCTATTATATCTACTCGGTGATCTCCATTCTGCTGATCGCCATGTGTATAACTCTCGGTCTGCTGAT
GCTCCGACAGAATAATAATCTGCGTCGCGCCCATGTTCGTATGAAAACGCTGGCCAACGATCTGCAGGCCTCGAAAGAGA
AGCTGCAGGTGCAGAACCGCCGGCTGCAGTACGATGCCTACCATGATTCGCTGACCGGTATGCCCAACCGTCTCTCTTTC
TGGCAGCGGCTGCAGGAGATCGTCAACCAGGTGCGTCCCTATAAGGGATGCGCCGTGGTGATGCTTTTCGACCTCGACAG
CTTTAAGGATGTGAACGATACCCTTGGCCATGATGCTGGCGATAAGCTGCTGCAGGATCTGGCCAGTCGCCTCTCTTTTT
TCCGCAAAACCTCCGAGACGCTGTATCGCCTTGGCGGTGATGAGTTTGCGATGCTCTCCTACGATCTCACTGAAGAGATG
GCCCTTGAGCGGGCCAATGTTATCCGGGAGAAGATCAGCCAGCCCTATCAGATCTACGATGCGCAGATTAATATCGACGC
CTGCATTGGGATCGTGATCTCTGACGGTGAAAGCCGTACCGATTACCTGTACAAGTGCGCCGACCTCGCGCTGTATGAGG
CGAAAAAAGAGGGTAGCGGCCATGTGCAAATCTTCCGGCCGGGGATGCTGCAGCGCCTGCAGGAGAACAAATCGTTTGAA
GACGATCTGCTGCAGGCCCTGGCCCATGACGAATTCAAAGTCTACTATCAGCCGATCGCTGATACCGTCACGCGCGAAAT
CTACGGCTATGAAGCGCTGGTTCGCTGGTTCCATCCGGTGCGCGGCGCCGTGCCGCCGACGGTGTTTATTCCGGTGGCAG
AGAAAATCGGTCTTATTAATGCCCTAGGCGAATGGGTGCTGAAAACCGCCTGTGCCGAAGCGGCCAGCTGGGCGACGCCG
CTAAAGGTCTCGGTCAACGTTTCACCAATTCAGTTGATGAATACATCGCTGACCGACACCATTATCGAGGTGCTGCATCA
GACCGGCCTCGATCCGCGACGTCTTGATCTGGAGATCACCGAGTCGGACGTATTCAATGAGAACACCCGTTCGCTGGAAA
TTCTCAGCCAGCTGCGCGAGCAGGGCATTCAGATCTCCATCGATGACTTTGGTACCGGCTATTCTTCCCTGTCCCGTTTA
AGCTACTTCCCGTTCGATAAAATTAAAATCGACCGCTCGTTTGTCATCAATATTCCGGAGCAAAAAGACGATCTGGATAT
CGTCCGCCTGATTATCAGCATGGGAAAGAGCCTGCATATGCGCATTGTGGCGGAAGGTGTAGAGACCGAAGAGCAGTTGG
CTTCGCTGCAGGCGCTGGGCTGTGACCTGGTTCAGGGATATTTAATCGGCAAACCGAGTCCGCTGCGCTAA

Upstream 100 bases:

>100_bases
GTCTACCCTTACGACAGCAGTGCTGAATTACAGAACCAGATCTATTATTCCCGATCGGCCTGGCAAGTTTCAAAGATGAT
TATAGAATAAGGGTTGGATC

Downstream 100 bases:

>100_bases
CAAATTTTTAACGCGTTTATTTTTATTCTCCGGGCGATTTCAGGATCCTGAAATCGCCTTTTTTATTTTCTCTTAGCGCT
AATCCCTGCGAGGTATAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 636; Mature: 636

Protein sequence:

>636_residues
MNRILTAIILSLFVVTGYITYLVHERQSELQKFTRYTDSWSMSQMVSEYMRLESRLAGMAIGAEGADHDEVRLRLEIMMS
QIELLQEGDLGKFINKSEQRKTVVATLIRNLHLLDKQVDTMTPEQVRQILPVLSELDGPLTSMAAATLTQDINIVNITHD
KIQHLYYIYSVISILLIAMCITLGLLMLRQNNNLRRAHVRMKTLANDLQASKEKLQVQNRRLQYDAYHDSLTGMPNRLSF
WQRLQEIVNQVRPYKGCAVVMLFDLDSFKDVNDTLGHDAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEM
ALERANVIREKISQPYQIYDAQINIDACIGIVISDGESRTDYLYKCADLALYEAKKEGSGHVQIFRPGMLQRLQENKSFE
DDLLQALAHDEFKVYYQPIADTVTREIYGYEALVRWFHPVRGAVPPTVFIPVAEKIGLINALGEWVLKTACAEAASWATP
LKVSVNVSPIQLMNTSLTDTIIEVLHQTGLDPRRLDLEITESDVFNENTRSLEILSQLREQGIQISIDDFGTGYSSLSRL
SYFPFDKIKIDRSFVINIPEQKDDLDIVRLIISMGKSLHMRIVAEGVETEEQLASLQALGCDLVQGYLIGKPSPLR

Sequences:

>Translated_636_residues
MNRILTAIILSLFVVTGYITYLVHERQSELQKFTRYTDSWSMSQMVSEYMRLESRLAGMAIGAEGADHDEVRLRLEIMMS
QIELLQEGDLGKFINKSEQRKTVVATLIRNLHLLDKQVDTMTPEQVRQILPVLSELDGPLTSMAAATLTQDINIVNITHD
KIQHLYYIYSVISILLIAMCITLGLLMLRQNNNLRRAHVRMKTLANDLQASKEKLQVQNRRLQYDAYHDSLTGMPNRLSF
WQRLQEIVNQVRPYKGCAVVMLFDLDSFKDVNDTLGHDAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEM
ALERANVIREKISQPYQIYDAQINIDACIGIVISDGESRTDYLYKCADLALYEAKKEGSGHVQIFRPGMLQRLQENKSFE
DDLLQALAHDEFKVYYQPIADTVTREIYGYEALVRWFHPVRGAVPPTVFIPVAEKIGLINALGEWVLKTACAEAASWATP
LKVSVNVSPIQLMNTSLTDTIIEVLHQTGLDPRRLDLEITESDVFNENTRSLEILSQLREQGIQISIDDFGTGYSSLSRL
SYFPFDKIKIDRSFVINIPEQKDDLDIVRLIISMGKSLHMRIVAEGVETEEQLASLQALGCDLVQGYLIGKPSPLR
>Mature_636_residues
MNRILTAIILSLFVVTGYITYLVHERQSELQKFTRYTDSWSMSQMVSEYMRLESRLAGMAIGAEGADHDEVRLRLEIMMS
QIELLQEGDLGKFINKSEQRKTVVATLIRNLHLLDKQVDTMTPEQVRQILPVLSELDGPLTSMAAATLTQDINIVNITHD
KIQHLYYIYSVISILLIAMCITLGLLMLRQNNNLRRAHVRMKTLANDLQASKEKLQVQNRRLQYDAYHDSLTGMPNRLSF
WQRLQEIVNQVRPYKGCAVVMLFDLDSFKDVNDTLGHDAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEM
ALERANVIREKISQPYQIYDAQINIDACIGIVISDGESRTDYLYKCADLALYEAKKEGSGHVQIFRPGMLQRLQENKSFE
DDLLQALAHDEFKVYYQPIADTVTREIYGYEALVRWFHPVRGAVPPTVFIPVAEKIGLINALGEWVLKTACAEAASWATP
LKVSVNVSPIQLMNTSLTDTIIEVLHQTGLDPRRLDLEITESDVFNENTRSLEILSQLREQGIQISIDDFGTGYSSLSRL
SYFPFDKIKIDRSFVINIPEQKDDLDIVRLIISMGKSLHMRIVAEGVETEEQLASLQALGCDLVQGYLIGKPSPLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=411, Percent_Identity=35.7664233576642, Blast_Score=258, Evalue=1e-69,
Organism=Escherichia coli, GI1787541, Length=418, Percent_Identity=35.6459330143541, Blast_Score=254, Evalue=8e-69,
Organism=Escherichia coli, GI226510982, Length=418, Percent_Identity=28.4688995215311, Blast_Score=182, Evalue=4e-47,
Organism=Escherichia coli, GI1787055, Length=252, Percent_Identity=38.0952380952381, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1788502, Length=238, Percent_Identity=35.7142857142857, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI1788849, Length=428, Percent_Identity=28.5046728971963, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=34.5991561181435, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=34.0163934426229, Blast_Score=132, Evalue=9e-32,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=34.0080971659919, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI87082096, Length=435, Percent_Identity=27.3563218390805, Blast_Score=129, Evalue=7e-31,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=33.3333333333333, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI87081743, Length=249, Percent_Identity=34.136546184739, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788381, Length=422, Percent_Identity=26.0663507109005, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788956, Length=186, Percent_Identity=31.1827956989247, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87081977, Length=187, Percent_Identity=33.1550802139037, Blast_Score=90, Evalue=6e-19,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=30.2857142857143, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1787410, Length=239, Percent_Identity=27.6150627615063, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87081881, Length=168, Percent_Identity=30.952380952381, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=30.3030303030303, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=33.5329341317365, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI145693134, Length=132, Percent_Identity=29.5454545454545, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787816, Length=152, Percent_Identity=34.2105263157895, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=31.7365269461078, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1787056, Length=159, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787802, Length=139, Percent_Identity=30.9352517985612, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1789650, Length=449, Percent_Identity=20.4899777282851, Blast_Score=62, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 72346; Mature: 72346

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRILTAIILSLFVVTGYITYLVHERQSELQKFTRYTDSWSMSQMVSEYMRLESRLAGMA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCEE
IGAEGADHDEVRLRLEIMMSQIELLQEGDLGKFINKSEQRKTVVATLIRNLHLLDKQVDT
ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
MTPEQVRQILPVLSELDGPLTSMAAATLTQDINIVNITHDKIQHLYYIYSVISILLIAMC
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHH
ITLGLLMLRQNNNLRRAHVRMKTLANDLQASKEKLQVQNRRLQYDAYHDSLTGMPNRLSF
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHH
WQRLQEIVNQVRPYKGCAVVMLFDLDSFKDVNDTLGHDAGDKLLQDLASRLSFFRKTSET
HHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LYRLGGDEFAMLSYDLTEEMALERANVIREKISQPYQIYDAQINIDACIGIVISDGESRT
HHHCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEEEECCCCCH
DYLYKCADLALYEAKKEGSGHVQIFRPGMLQRLQENKSFEDDLLQALAHDEFKVYYQPIA
HHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH
DTVTREIYGYEALVRWFHPVRGAVPPTVFIPVAEKIGLINALGEWVLKTACAEAASWATP
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LKVSVNVSPIQLMNTSLTDTIIEVLHQTGLDPRRLDLEITESDVFNENTRSLEILSQLRE
EEEEECCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHCCCCCHHHHHHHHHHH
QGIQISIDDFGTGYSSLSRLSYFPFDKIKIDRSFVINIPEQKDDLDIVRLIISMGKSLHM
CCCEEEECCCCCCHHHHHHCCCCCCHHEEECCEEEEECCCCCCHHHHHHHHHHCCCCCEE
RIVAEGVETEEQLASLQALGCDLVQGYLIGKPSPLR
HHHHCCCCHHHHHHHHHHHHHHHHHCEECCCCCCCC
>Mature Secondary Structure
MNRILTAIILSLFVVTGYITYLVHERQSELQKFTRYTDSWSMSQMVSEYMRLESRLAGMA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCEE
IGAEGADHDEVRLRLEIMMSQIELLQEGDLGKFINKSEQRKTVVATLIRNLHLLDKQVDT
ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
MTPEQVRQILPVLSELDGPLTSMAAATLTQDINIVNITHDKIQHLYYIYSVISILLIAMC
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHH
ITLGLLMLRQNNNLRRAHVRMKTLANDLQASKEKLQVQNRRLQYDAYHDSLTGMPNRLSF
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHH
WQRLQEIVNQVRPYKGCAVVMLFDLDSFKDVNDTLGHDAGDKLLQDLASRLSFFRKTSET
HHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LYRLGGDEFAMLSYDLTEEMALERANVIREKISQPYQIYDAQINIDACIGIVISDGESRT
HHHCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEEEECCCCCH
DYLYKCADLALYEAKKEGSGHVQIFRPGMLQRLQENKSFEDDLLQALAHDEFKVYYQPIA
HHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH
DTVTREIYGYEALVRWFHPVRGAVPPTVFIPVAEKIGLINALGEWVLKTACAEAASWATP
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LKVSVNVSPIQLMNTSLTDTIIEVLHQTGLDPRRLDLEITESDVFNENTRSLEILSQLRE
EEEEECCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHCCCCCHHHHHHHHHHH
QGIQISIDDFGTGYSSLSRLSYFPFDKIKIDRSFVINIPEQKDDLDIVRLIISMGKSLHM
CCCEEEECCCCCCHHHHHHCCCCCCHHEEECCEEEEECCCCCCHHHHHHHHHHCCCCCEE
RIVAEGVETEEQLASLQALGCDLVQGYLIGKPSPLR
HHHHCCCCHHHHHHHHHHHHHHHHHCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]