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The map label for this gene is vagD

Identifier: 238895529

GI number: 238895529

Start: 3432736

End: 3433152

Strand: Direct

Name: vagD

Synonym: KP1_3606

Alternate gene names: NA

Gene position: 3432736-3433152 (Clockwise)

Preceding gene: 238895528

Following gene: 238895530

Centisome position: 65.4

GC content: 67.15

Gene sequence:

>417_bases
ATGAAGAAAACCTGGATGCTCGACACTAACATCTGCTCGTTCATCATGCGCGAGCAGCCGGCAGCGGTGCTGAAGCGCCT
GGAGCAGGCGGGGCTGCGCGGTGATCGCATCGTGGTCTCGGCCGTGACGTATGCCGAGATGCGCTTCGGCGCCACCGGCC
CGAAGGCCTCGCCGCACCATATTCAGCTGGTCGACGCGTTCTGCGCGCGCCTCGATGCCATCCTGCCCTGGGACCGGGCC
GCGGTGGACGCCACGACGGACATCCGGGTGGCGCTGCGCCTCGCCGGGACGCCGATCGGCCCGAACGACACGGCCATTGC
CGGCCACGCCATCGCGGCGGGCGCCGTCCTGGTGACGAACAATGTGAGAGAGTTTGCGCGGGTACCGGGCCTGGTGCTGG
AAGACTGGGTAAAATAA

Upstream 100 bases:

>100_bases
TCCGGCCGACCTGGGGCTCGTTCGCGCAGCTGGACAGGGCCGATCCGGACTTTATGGTGGAGCGTGAGGATGTGGTCAGC
GATGAAGGACGCTTTGAGCC

Downstream 100 bases:

>100_bases
TCCCGATAAAAATTACCGTGACGGAGACGACAGACATGAATGCTGAACACACCGACTACGGCTGCCTTTTCAGTGAACCG
GCTGAAGAAATTTCCGGTGA

Product: putative DNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MKKTWMLDTNICSFIMREQPAAVLKRLEQAGLRGDRIVVSAVTYAEMRFGATGPKASPHHIQLVDAFCARLDAILPWDRA
AVDATTDIRVALRLAGTPIGPNDTAIAGHAIAAGAVLVTNNVREFARVPGLVLEDWVK

Sequences:

>Translated_138_residues
MKKTWMLDTNICSFIMREQPAAVLKRLEQAGLRGDRIVVSAVTYAEMRFGATGPKASPHHIQLVDAFCARLDAILPWDRA
AVDATTDIRVALRLAGTPIGPNDTAIAGHAIAAGAVLVTNNVREFARVPGLVLEDWVK
>Mature_138_residues
MKKTWMLDTNICSFIMREQPAAVLKRLEQAGLRGDRIVVSAVTYAEMRFGATGPKASPHHIQLVDAFCARLDAILPWDRA
AVDATTDIRVALRLAGTPIGPNDTAIAGHAIAAGAVLVTNNVREFARVPGLVLEDWVK

Specific function: Unknown

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein C (vapC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 14946; Mature: 14946

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTWMLDTNICSFIMREQPAAVLKRLEQAGLRGDRIVVSAVTYAEMRFGATGPKASPHH
CCCEEEEHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCH
IQLVDAFCARLDAILPWDRAAVDATTDIRVALRLAGTPIGPNDTAIAGHAIAAGAVLVTN
HHHHHHHHHHHHHCCCCCCCCCCCCCHHEEEEEECCCCCCCCCCEEECHHHHHCEEEEEC
NVREFARVPGLVLEDWVK
CHHHHHHCCCHHHHHHCC
>Mature Secondary Structure
MKKTWMLDTNICSFIMREQPAAVLKRLEQAGLRGDRIVVSAVTYAEMRFGATGPKASPHH
CCCEEEEHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCH
IQLVDAFCARLDAILPWDRAAVDATTDIRVALRLAGTPIGPNDTAIAGHAIAAGAVLVTN
HHHHHHHHHHHHHCCCCCCCCCCCCCHHEEEEEECCCCCCCCCCEEECHHHHHCEEEEEC
NVREFARVPGLVLEDWVK
CHHHHHHCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]