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The map label for this gene is ompS [H]

Identifier: 238895491

GI number: 238895491

Start: 3376429

End: 3377574

Strand: Direct

Name: ompS [H]

Synonym: KP1_3563

Alternate gene names: 238895491

Gene position: 3376429-3377574 (Clockwise)

Preceding gene: 238895486

Following gene: 238895492

Centisome position: 64.33

GC content: 52.71

Gene sequence:

>1146_bases
ATGAAAAGAAAAGTACTGGCACTCATGGTTCCGGCATTATTAATGGCTAGCGCCGCTAATGCCGCCGAAATCTATAACAA
AAACGGTAATAAACTGGACCTCTACGGGAAAGTTGACGGCCTGCATTACTTCTCTGACGACGCTTCAGAGGACGGCGACC
AGACCTATGTTCGCTTTGGTCTGAAAGGCGAAACGCAGATTACTTCCGAGTTAACCGGCTACGGTCAGTGGGAATACAAC
ATTCAGGCGAACACCAGCGAAAAAGAAGGCGCGAACTCCTGGACCCGTCTCGGCTTTGCCGGCCTGAAGTTTGCCGACTG
CGGGTCGCTGGACTATGGCCGGAACTACGGCGTGGTCTACGACATTGAATCCTGGACCGATATGCTGCCGGAATTCGGCG
GCGATACCTACACCCAGACCGACGTTTACATGACCGGCCGTACTAACGGCGTGGCCACCTACCGTAACAGCGATTTCTTC
GGCCTCGTCGACGGCCTGCATTTCGCCCTGCAGTATCAGGGTAATAATGAAAACGCCGGTTCTGGCGAAGGCACTAATAA
CGGTGGGAAACGTAAGCTGGCGCGGGAAAATGGCGACGGTTTTGGTATCTCCAGCTACTACGATCTCGATATGGGCATCA
GCTTCGGGGCAGCGTATTCGTCTTCTGACCGTACCCATAACCAGCTGGCGGCCGCGCGTAGCAGCCAGCGTTATGCCAAC
GGCGATAAAGCCGATGCCTGGACCGTCGGCGCGAAATATGACGCCAATAACATCTATCTGGCCGCCATGTATGCTGAGAC
CCGCAACATGACCTTCTATGGCAACGATAGTTTTGGCGGAATTGCCAACAAAACGCAGAACTTCGAAGTGGTCGCGCAGT
ATCAGTTCGACGACTTTAATTTACCGCTGCGTCCGTCCGTCGCCTATCTGCAGTCGAAGGGTAAAGATCTCTACGCCTAT
TCTCGCTACGGCGACAAGGATCTGGTCAAGTATGTCGACGTGGGCATGACCTACTACTTCAACAAAAATATGTCCACCTA
TGTGGATTATAAAATTAACCTGCTGGATGAAGACGACCGCTTCTACAAAAACAGTGGTATCGCGACCGATGATATCGTCG
CCCTCGGCCTGGTCTATCAGTTCTGA

Upstream 100 bases:

>100_bases
TTTTATTTTAAATAAAGATGAACTTAGTCGTTAGTATCGGATCGTCATTCCGGAGGGATTGTCATAATTCATAGTAATTA
TTATTAAAAGGGAATATATA

Downstream 100 bases:

>100_bases
TCCCCGACAAAGCCCGCGTTCAGCGGGCTTTTTTATGTTCCCGCTCCGTTGAGATCACTCTTTTCGACATTGCCGCTTTC
CAGGCGTACCTTCCCTCTTT

Product: outer membrane pore protein S1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MKRKVLALMVPALLMASAANAAEIYNKNGNKLDLYGKVDGLHYFSDDASEDGDQTYVRFGLKGETQITSELTGYGQWEYN
IQANTSEKEGANSWTRLGFAGLKFADCGSLDYGRNYGVVYDIESWTDMLPEFGGDTYTQTDVYMTGRTNGVATYRNSDFF
GLVDGLHFALQYQGNNENAGSGEGTNNGGKRKLARENGDGFGISSYYDLDMGISFGAAYSSSDRTHNQLAAARSSQRYAN
GDKADAWTVGAKYDANNIYLAAMYAETRNMTFYGNDSFGGIANKTQNFEVVAQYQFDDFNLPLRPSVAYLQSKGKDLYAY
SRYGDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDRFYKNSGIATDDIVALGLVYQF

Sequences:

>Translated_381_residues
MKRKVLALMVPALLMASAANAAEIYNKNGNKLDLYGKVDGLHYFSDDASEDGDQTYVRFGLKGETQITSELTGYGQWEYN
IQANTSEKEGANSWTRLGFAGLKFADCGSLDYGRNYGVVYDIESWTDMLPEFGGDTYTQTDVYMTGRTNGVATYRNSDFF
GLVDGLHFALQYQGNNENAGSGEGTNNGGKRKLARENGDGFGISSYYDLDMGISFGAAYSSSDRTHNQLAAARSSQRYAN
GDKADAWTVGAKYDANNIYLAAMYAETRNMTFYGNDSFGGIANKTQNFEVVAQYQFDDFNLPLRPSVAYLQSKGKDLYAY
SRYGDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDRFYKNSGIATDDIVALGLVYQF
>Mature_381_residues
MKRKVLALMVPALLMASAANAAEIYNKNGNKLDLYGKVDGLHYFSDDASEDGDQTYVRFGLKGETQITSELTGYGQWEYN
IQANTSEKEGANSWTRLGFAGLKFADCGSLDYGRNYGVVYDIESWTDMLPEFGGDTYTQTDVYMTGRTNGVATYRNSDFF
GLVDGLHFALQYQGNNENAGSGEGTNNGGKRKLARENGDGFGISSYYDLDMGISFGAAYSSSDRTHNQLAAARSSQRYAN
GDKADAWTVGAKYDANNIYLAAMYAETRNMTFYGNDSFGGIANKTQNFEVVAQYQFDDFNLPLRPSVAYLQSKGKDLYAY
SRYGDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDRFYKNSGIATDDIVALGLVYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=388, Percent_Identity=70.1030927835051, Blast_Score=502, Evalue=1e-143,
Organism=Escherichia coli, GI1788544, Length=386, Percent_Identity=66.3212435233161, Blast_Score=456, Evalue=1e-129,
Organism=Escherichia coli, GI1786436, Length=384, Percent_Identity=55.9895833333333, Blast_Score=411, Evalue=1e-116,
Organism=Escherichia coli, GI1787160, Length=390, Percent_Identity=57.1794871794872, Blast_Score=387, Evalue=1e-109,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 42422; Mature: 42422

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKVLALMVPALLMASAANAAEIYNKNGNKLDLYGKVDGLHYFSDDASEDGDQTYVRFG
CCCHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEE
LKGETQITSELTGYGQWEYNIQANTSEKEGANSWTRLGFAGLKFADCGSLDYGRNYGVVY
CCCCCEEHHHHCCCCEEEEEEEECCCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCEEE
DIESWTDMLPEFGGDTYTQTDVYMTGRTNGVATYRNSDFFGLVDGLHFALQYQGNNENAG
ECHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEECCCCEEEECCEEEEEEECCCCCCCC
SGEGTNNGGKRKLARENGDGFGISSYYDLDMGISFGAAYSSSDRTHNQLAAARSSQRYAN
CCCCCCCCCCEEHHHCCCCCCCCCEEEEECCCCEECCCCCCCCCHHHHHHHHHCCCCCCC
GDKADAWTVGAKYDANNIYLAAMYAETRNMTFYGNDSFGGIANKTQNFEVVAQYQFDDFN
CCCCCEEEECCEECCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCC
LPLRPSVAYLQSKGKDLYAYSRYGDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDR
CCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHCCEEEEECCCCCEEEEEEEEEECCCCC
FYKNSGIATDDIVALGLVYQF
EECCCCCCHHHHHEEEEEECC
>Mature Secondary Structure
MKRKVLALMVPALLMASAANAAEIYNKNGNKLDLYGKVDGLHYFSDDASEDGDQTYVRFG
CCCHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEE
LKGETQITSELTGYGQWEYNIQANTSEKEGANSWTRLGFAGLKFADCGSLDYGRNYGVVY
CCCCCEEHHHHCCCCEEEEEEEECCCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCEEE
DIESWTDMLPEFGGDTYTQTDVYMTGRTNGVATYRNSDFFGLVDGLHFALQYQGNNENAG
ECHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEECCCCEEEECCEEEEEEECCCCCCCC
SGEGTNNGGKRKLARENGDGFGISSYYDLDMGISFGAAYSSSDRTHNQLAAARSSQRYAN
CCCCCCCCCCEEHHHCCCCCCCCCEEEEECCCCEECCCCCCCCCHHHHHHHHHCCCCCCC
GDKADAWTVGAKYDANNIYLAAMYAETRNMTFYGNDSFGGIANKTQNFEVVAQYQFDDFN
CCCCCEEEECCEECCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCC
LPLRPSVAYLQSKGKDLYAYSRYGDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDR
CCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHCCEEEEECCCCCEEEEEEEEEECCCCC
FYKNSGIATDDIVALGLVYQF
EECCCCCCHHHHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]