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The map label for this gene is sdiA [H]

Identifier: 238895474

GI number: 238895474

Start: 3360737

End: 3361459

Strand: Reverse

Name: sdiA [H]

Synonym: KP1_3544

Alternate gene names: 238895474

Gene position: 3361459-3360737 (Counterclockwise)

Preceding gene: 238895475

Following gene: 238895472

Centisome position: 64.05

GC content: 54.36

Gene sequence:

>723_bases
ATGAGGGACAATGATTTTTTCAGCTGGCGGCGGGATATGCTGCACCAATTTCAGTCCATGGCCACCGGCGAGGAGGTTTA
TAATCTCCTGCAACGTGAAACCGAAGCGCTGGAATATGATTACTACACGCTTTGTGTGCGCCACCCGGTGCCTTTCACCC
GCCCCCGCGTTACGTTCCAGTCGACTTACCCCCGCGCATGGATGTCGCACTATCAGGCAGAAAATTATTTCGCGATAGAT
CCTGTGTTACGGCCGGAGAATTTTATGCGTGGCCATCTGCCATGGAACGACAGCCTGTTTCGTGATGCGCCGGCACTGTG
GGACGGGGCGCGTGACCATGGTCTGCAAAAGGGGGTGACGCAGTGCCTGACGTTGCCAAACCATGCTCAGGGATTTCTCT
CTGTCTCCGCGAACAATCGTCTGCCGGGCGGTTACCCTGAAGATGAGCTTGAGCTGCGTCTGCGAACGCTGACTGAACTA
AGCTTGCTGACGCTGCTGCGTCTGGAAGATGAGATGGTGATGCCGCCGGAGATGAAGTTCAGCCGCCGCGAACTGGAAAT
CCTCAAATGGACGGCGGAAGGAAAGACTTCGGCGGAGGTGGCGATGATTCTCTCGATTTCGGAAAATACGGTGAATTTCC
ATCAGAAGAATATGCAGCGGAAATTTAATGCGCCGAATAAAACGCAAATTGCCTGCTACGCCGTGGCGACTGGGCTAATC
TGA

Upstream 100 bases:

>100_bases
AATGCGACAGCTACGATATTTTATACATATAAATAAGATTTATGTGTTAGTTTTCTGTATTTATAATAATGATTATCAAT
CAGGAGTTATTTGCACAGCT

Downstream 100 bases:

>100_bases
ATGCGCCTGCCGTTCTGCGTGTCAGACGTGATACCGGCTGTCAGTGATACTTTCAGCCGGCACAGGATTACTGCCGATAG
GCTTGTTTAATCTGCTTAAC

Product: DNA-binding transcriptional activator SdiA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MRDNDFFSWRRDMLHQFQSMATGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQSTYPRAWMSHYQAENYFAID
PVLRPENFMRGHLPWNDSLFRDAPALWDGARDHGLQKGVTQCLTLPNHAQGFLSVSANNRLPGGYPEDELELRLRTLTEL
SLLTLLRLEDEMVMPPEMKFSRRELEILKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI

Sequences:

>Translated_240_residues
MRDNDFFSWRRDMLHQFQSMATGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQSTYPRAWMSHYQAENYFAID
PVLRPENFMRGHLPWNDSLFRDAPALWDGARDHGLQKGVTQCLTLPNHAQGFLSVSANNRLPGGYPEDELELRLRTLTEL
SLLTLLRLEDEMVMPPEMKFSRRELEILKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI
>Mature_240_residues
MRDNDFFSWRRDMLHQFQSMATGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQSTYPRAWMSHYQAENYFAID
PVLRPENFMRGHLPWNDSLFRDAPALWDGARDHGLQKGVTQCLTLPNHAQGFLSVSANNRLPGGYPEDELELRLRTLTEL
SLLTLLRLEDEMVMPPEMKFSRRELEILKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI

Specific function: Activates cell division by specifically increasing transcription from one of the two promoters that lie immediately upstream of the ftsQAZ gene cluster. Activates ydiV expression in response to extracellular autoinducer AI-1 (Vibrio fischeri autoinducer o

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=240, Percent_Identity=65.8333333333333, Blast_Score=338, Evalue=2e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27981; Mature: 27981

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDNDFFSWRRDMLHQFQSMATGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQ
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEC
STYPRAWMSHYQAENYFAIDPVLRPENFMRGHLPWNDSLFRDAPALWDGARDHGLQKGVT
CCCCHHHHHHHCCCCEEEECCCCCCCHHHCCCCCCCCCHHHCCCHHHCCHHHHHHHHHHH
QCLTLPNHAQGFLSVSANNRLPGGYPEDELELRLRTLTELSLLTLLRLEDEMVMPPEMKF
HHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
SRRELEILKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI
CHHHEEEEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
>Mature Secondary Structure
MRDNDFFSWRRDMLHQFQSMATGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQ
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEC
STYPRAWMSHYQAENYFAIDPVLRPENFMRGHLPWNDSLFRDAPALWDGARDHGLQKGVT
CCCCHHHHHHHCCCCEEEECCCCCCCHHHCCCCCCCCCHHHCCCHHHCCHHHHHHHHHHH
QCLTLPNHAQGFLSVSANNRLPGGYPEDELELRLRTLTELSLLTLLRLEDEMVMPPEMKF
HHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
SRRELEILKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI
CHHHEEEEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3515318; 9097040; 9278503; 1915297 [H]