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The map label for this gene is yecD [H]

Identifier: 238895443

GI number: 238895443

Start: 3329663

End: 3330229

Strand: Direct

Name: yecD [H]

Synonym: KP1_3511

Alternate gene names: 238895443

Gene position: 3329663-3330229 (Clockwise)

Preceding gene: 238895436

Following gene: 238895444

Centisome position: 63.44

GC content: 62.61

Gene sequence:

>567_bases
ATGTTAGAACTCAATGCAAAAAACACGGCGCTGGTGGTAATCGATCTGCAGGAAGGCATTCTGCCTTTCGCCGGCGGCCC
GCATCGGGCTGACGAGGTGGTGGCGCGCGCCGCTCGCCTGGCAGACAAGTGCCGGCAACAGGGTTCGCCGGTCATCATGG
TCCGCGTTGGCTGGTCGGCCGATTTCGCCGAAGCGCTGAAACAGCCTGTCGACGCTCAGGCCGGGGCGCATACGCTGCCC
GAAAACTGGTGGACCTACCCGGCCACGCTGGGTAAGCAGGAGAGCGATATCGAAGTGACCAAACGCCAGTGGGGCGCGTT
CTATGGCACCGACCTTGAGCTTCAGCTGCGCCGCCGCGGGATCGACACCATTATTCTCTGCGGCATCTCCACCAACATCG
GCGTCGAATCCACCGCCCGCAATGCCTGGGAGCTGGGTTTTAACCTGGTCATCGCTGAAGATGCCTGCAGCGCCGCCTCC
GCCGAACAGCATCAGGGCAGCATGACGCATATTTTCCCGCGCATCGGCCGGGTGCGCAGTACCGAGGAGATCCTCACGGC
GCTATGA

Upstream 100 bases:

>100_bases
AACGTCCACACTCACATAAATTAACAAAATTTGTTACTCTTTTGCTGAAGCCGCAAAGGTATTGTAGCCGCCTGACAACA
GATGAAGATACGGGGATACC

Downstream 100 bases:

>100_bases
TTTATATTGGGCTTCCCCAGTGGTCGCACCCGAAATGGGTGCGCCTTGGCATCACCAGCCTTGAAGAGTACGCCCGCCAC
TTTAACTGCGTGGAGGGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MLELNAKNTALVVIDLQEGILPFAGGPHRADEVVARAARLADKCRQQGSPVIMVRVGWSADFAEALKQPVDAQAGAHTLP
ENWWTYPATLGKQESDIEVTKRQWGAFYGTDLELQLRRRGIDTIILCGISTNIGVESTARNAWELGFNLVIAEDACSAAS
AEQHQGSMTHIFPRIGRVRSTEEILTAL

Sequences:

>Translated_188_residues
MLELNAKNTALVVIDLQEGILPFAGGPHRADEVVARAARLADKCRQQGSPVIMVRVGWSADFAEALKQPVDAQAGAHTLP
ENWWTYPATLGKQESDIEVTKRQWGAFYGTDLELQLRRRGIDTIILCGISTNIGVESTARNAWELGFNLVIAEDACSAAS
AEQHQGSMTHIFPRIGRVRSTEEILTAL
>Mature_188_residues
MLELNAKNTALVVIDLQEGILPFAGGPHRADEVVARAARLADKCRQQGSPVIMVRVGWSADFAEALKQPVDAQAGAHTLP
ENWWTYPATLGKQESDIEVTKRQWGAFYGTDLELQLRRRGIDTIILCGISTNIGVESTARNAWELGFNLVIAEDACSAAS
AEQHQGSMTHIFPRIGRVRSTEEILTAL

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

Organism=Escherichia coli, GI87081992, Length=188, Percent_Identity=81.3829787234042, Blast_Score=318, Evalue=1e-88,
Organism=Escherichia coli, GI87081820, Length=214, Percent_Identity=28.0373831775701, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786811, Length=196, Percent_Identity=25.5102040816327, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 20567; Mature: 20567

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELNAKNTALVVIDLQEGILPFAGGPHRADEVVARAARLADKCRQQGSPVIMVRVGWSA
CEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
DFAEALKQPVDAQAGAHTLPENWWTYPATLGKQESDIEVTKRQWGAFYGTDLELQLRRRG
HHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHCCCCCCCCCEEHHHHCC
IDTIILCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHQGSMTHIFPRIGRVRS
CCEEEEEECCCCCCCCHHCCHHHHCCEEEEEECCCCCCCCHHHHCCCHHHHHHHHCCCCC
TEEILTAL
HHHHHHCC
>Mature Secondary Structure
MLELNAKNTALVVIDLQEGILPFAGGPHRADEVVARAARLADKCRQQGSPVIMVRVGWSA
CEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
DFAEALKQPVDAQAGAHTLPENWWTYPATLGKQESDIEVTKRQWGAFYGTDLELQLRRRG
HHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHCCCCCCCCCEEHHHHCC
IDTIILCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHQGSMTHIFPRIGRVRS
CCEEEEEECCCCCCCCHHCCHHHHCCEEEEEECCCCCCCCHHHHCCCHHHHHHHHCCCCC
TEEILTAL
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]