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The map label for this gene is ycgM [H]

Identifier: 238895375

GI number: 238895375

Start: 3262553

End: 3263212

Strand: Reverse

Name: ycgM [H]

Synonym: KP1_3441

Alternate gene names: 238895375

Gene position: 3263212-3262553 (Counterclockwise)

Preceding gene: 238895376

Following gene: 238895374

Centisome position: 62.17

GC content: 58.64

Gene sequence:

>660_bases
ATGTACCAACATCATAACTGGCAGGGTGCGCTTCTGGATTATCCAGTAAGCAAAGTAGTGTGCGTCGGCAGTAATTATGC
GAAACACATCAAGGAAATGGGCAGTGCGACGCCGGAAGAGCCGGTGCTGTTTATTAAACCTGAGACTGCGCTGTGCGATC
TTCGTCAGCCGTTGGTGCTCCCTGAGGGGCTGGGCTCGGTGCATCACGAAGTCGAGCTGGCGGTGCTTATCGGCAGCACG
CTGCGTCAGGCGACGGAAGAGCATGTGCTGAAAGGGATTGCCGGCTATGGCGTCGCGCTGGATCTCACGCTGCGCGACCT
GCAGGCGAAAATGAAAAAAGCGGGACAACCCTGGGAGAAGGCCAAAGGCTTCGATAACGCCTGTCCGATCTCCGGCTTTA
TCCCGGCCGCTGAGTTCCACGGCGACCCGCAGAATACGTCGTTAAGCCTGAAGATTAATGGCGAAGTGCGCCAGCAGGGC
ACCACTGCCGACATGATCCATAGGATTGTGCCGCTGATCGCCTATATGTCGCGCTTCTTTACCCTCAAAGCCGGGGATGT
GATCCTCACCGGCACCCCGGAAGGCGTGGGGCCGCTGCACAGCGGTGACGAGCTGGAGGTCGGCTTCAACGGCCTGGCGC
TCACTACCCGCGTGCTGTAA

Upstream 100 bases:

>100_bases
CAGGGCTATTACCTGCAACTGCCTCCGCCGTCTGAAAATCTACTAAAGAAACACCTGGCGGAACAGGGGAAACAATCCGA
TTAACCCACGAGGGAAAATA

Downstream 100 bases:

>100_bases
GCGCTATTTGCCGCCTTTTGGGGCGGCAAAACTTGCATCGGCGTGCCAGACTGGTTATAAGGTGCACCCTTAACTGGCAA
CGACGGACACTCCGATGAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSATPEEPVLFIKPETALCDLRQPLVLPEGLGSVHHEVELAVLIGST
LRQATEEHVLKGIAGYGVALDLTLRDLQAKMKKAGQPWEKAKGFDNACPISGFIPAAEFHGDPQNTSLSLKINGEVRQQG
TTADMIHRIVPLIAYMSRFFTLKAGDVILTGTPEGVGPLHSGDELEVGFNGLALTTRVL

Sequences:

>Translated_219_residues
MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSATPEEPVLFIKPETALCDLRQPLVLPEGLGSVHHEVELAVLIGST
LRQATEEHVLKGIAGYGVALDLTLRDLQAKMKKAGQPWEKAKGFDNACPISGFIPAAEFHGDPQNTSLSLKINGEVRQQG
TTADMIHRIVPLIAYMSRFFTLKAGDVILTGTPEGVGPLHSGDELEVGFNGLALTTRVL
>Mature_219_residues
MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSATPEEPVLFIKPETALCDLRQPLVLPEGLGSVHHEVELAVLIGST
LRQATEEHVLKGIAGYGVALDLTLRDLQAKMKKAGQPWEKAKGFDNACPISGFIPAAEFHGDPQNTSLSLKINGEVRQQG
TTADMIHRIVPLIAYMSRFFTLKAGDVILTGTPEGVGPLHSGDELEVGFNGLALTTRVL

Specific function: Unknown

COG id: COG0179

COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAH family [H]

Homologues:

Organism=Homo sapiens, GI13654274, Length=198, Percent_Identity=46.4646464646465, Blast_Score=194, Evalue=4e-50,
Organism=Homo sapiens, GI215422413, Length=194, Percent_Identity=46.9072164948454, Blast_Score=194, Evalue=7e-50,
Organism=Homo sapiens, GI66348062, Length=194, Percent_Identity=46.9072164948454, Blast_Score=194, Evalue=7e-50,
Organism=Homo sapiens, GI156231349, Length=197, Percent_Identity=39.0862944162437, Blast_Score=138, Evalue=3e-33,
Organism=Homo sapiens, GI40786394, Length=210, Percent_Identity=36.6666666666667, Blast_Score=132, Evalue=3e-31,
Organism=Escherichia coli, GI1787428, Length=219, Percent_Identity=86.7579908675799, Blast_Score=404, Evalue=1e-114,
Organism=Caenorhabditis elegans, GI17557057, Length=193, Percent_Identity=44.559585492228, Blast_Score=176, Evalue=8e-45,
Organism=Saccharomyces cerevisiae, GI6324161, Length=220, Percent_Identity=35.4545454545455, Blast_Score=144, Evalue=9e-36,
Organism=Drosophila melanogaster, GI28571789, Length=199, Percent_Identity=39.6984924623116, Blast_Score=156, Evalue=1e-38,
Organism=Drosophila melanogaster, GI28572127, Length=180, Percent_Identity=33.3333333333333, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24663695, Length=186, Percent_Identity=29.0322580645161, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002529
- InterPro:   IPR011234 [H]

Pfam domain/function: PF01557 FAA_hydrolase [H]

EC number: NA

Molecular weight: Translated: 23733; Mature: 23733

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSATPEEPVLFIKPETALCDLRQPLVL
CCCCCCCCCCEECCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCHHHHHCCCCCCC
PEGLGSVHHEVELAVLIGSTLRQATEEHVLKGIAGYGVALDLTLRDLQAKMKKAGQPWEK
CCCCCCHHHHEEHHEEHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCHHH
AKGFDNACPISGFIPAAEFHGDPQNTSLSLKINGEVRQQGTTADMIHRIVPLIAYMSRFF
HCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHE
TLKAGDVILTGTPEGVGPLHSGDELEVGFNGLALTTRVL
EEECCCEEEECCCCCCCCCCCCCEEEECCCCEEEEEECC
>Mature Secondary Structure
MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSATPEEPVLFIKPETALCDLRQPLVL
CCCCCCCCCCEECCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCHHHHHCCCCCCC
PEGLGSVHHEVELAVLIGSTLRQATEEHVLKGIAGYGVALDLTLRDLQAKMKKAGQPWEK
CCCCCCHHHHEEHHEEHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCHHH
AKGFDNACPISGFIPAAEFHGDPQNTSLSLKINGEVRQQGTTADMIHRIVPLIAYMSRFF
HCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHE
TLKAGDVILTGTPEGVGPLHSGDELEVGFNGLALTTRVL
EEECCCEEEECCCCCCCCCCCCCEEEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 10806384 [H]