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The map label for this gene is yjiE [H]

Identifier: 238895340

GI number: 238895340

Start: 3224689

End: 3225597

Strand: Direct

Name: yjiE [H]

Synonym: KP1_3401

Alternate gene names: 238895340

Gene position: 3224689-3225597 (Clockwise)

Preceding gene: 238895338

Following gene: 238895351

Centisome position: 61.44

GC content: 52.48

Gene sequence:

>909_bases
TTGAGGACTGGATCGGTGTTGGCAAATCTGGAAGTAAAATGGCTGTATGATGTGATTGCCCTTGAGGAGTCGCGCAGCTT
TACCCTGGCGGCCAAAGCCCGCAACATCTCTCAGTCTTCGTTCAGCCGACGCATCCAGTCGCTGGAGGCTTCCCTCGGAT
TCAGCATCTTCGATCGTAGCGCCAACCCTCTGCAGCTGACCAACCGCGGGAAAATTTTTGTCGGCTATGCGCGAAATATG
CTCGATGACATGGATTTTCAGATCAGCCGTATTAAAGGCTTAAATAACACTACCCAGAAAATAAGAATCGACGCCGCCCC
TTCGCTGTCGGTGTTATTACTGCCGGAGATCATCGCCGGTTACACCGACCGTAAAAATAAGACTTTTCATGTTGAATCGA
TTAACGTCAACGACGCCGTATTTAACCTGAAAGAGGGAAAAAGCGATTTTATCCTCTCCTTCTATAATGAAGAATTGATG
AACTATCCGTTTATTAATCATAAAATTTTTGATTCTTATCTGCACCTGGTCTCCCCCTGCGACGAACATGGCCGCCCGCT
GTTTCATTTACATCGCGGCGTGCTGCCGCTGATGAAATACGCCAACGACAGCTATATGGGGCGCCAGGTGAACCAGGTGA
TCGACCGCACGCCGGAGATCACCTTCTCTCTCACCTTTGTCTCTTCCATGAGCGAGCTGCTCAAGCGCATGATCCTCAAT
GGCGACGGCGTGGGCTGGCTGCCGCAGTACTCCATTCAGCGCGAGCTGGACGAAGGCCGGCTGACGATCCTCGATGAGAG
CCTGTCGCTGCCGATCGGCGCCTGGCTCTACCGCTCCGGCTCGCGGCTTAACCAGGCCGCCGAACGTTTCTGGCAGCACA
TTAAAACCCGTAACGAACCGCGGGAATAA

Upstream 100 bases:

>100_bases
AAATCTCAACTTTCCAAAAAATGTTAACACCTGTCGATAATTATGTTAATTGCATAGTTTCTATGCGCTATGCTAAAATT
GCATAGCCTTTATTGCGTTT

Downstream 100 bases:

>100_bases
CCCCCTCAGCCGCTGATCCCCAGATATGCCTTACGCACCTCCGGGTCGTTGAGCAGCGTCTGGCCGCTACCGCTCAGGCG
GATCTGGCCGTTCACCATCA

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MRTGSVLANLEVKWLYDVIALEESRSFTLAAKARNISQSSFSRRIQSLEASLGFSIFDRSANPLQLTNRGKIFVGYARNM
LDDMDFQISRIKGLNNTTQKIRIDAAPSLSVLLLPEIIAGYTDRKNKTFHVESINVNDAVFNLKEGKSDFILSFYNEELM
NYPFINHKIFDSYLHLVSPCDEHGRPLFHLHRGVLPLMKYANDSYMGRQVNQVIDRTPEITFSLTFVSSMSELLKRMILN
GDGVGWLPQYSIQRELDEGRLTILDESLSLPIGAWLYRSGSRLNQAAERFWQHIKTRNEPRE

Sequences:

>Translated_302_residues
MRTGSVLANLEVKWLYDVIALEESRSFTLAAKARNISQSSFSRRIQSLEASLGFSIFDRSANPLQLTNRGKIFVGYARNM
LDDMDFQISRIKGLNNTTQKIRIDAAPSLSVLLLPEIIAGYTDRKNKTFHVESINVNDAVFNLKEGKSDFILSFYNEELM
NYPFINHKIFDSYLHLVSPCDEHGRPLFHLHRGVLPLMKYANDSYMGRQVNQVIDRTPEITFSLTFVSSMSELLKRMILN
GDGVGWLPQYSIQRELDEGRLTILDESLSLPIGAWLYRSGSRLNQAAERFWQHIKTRNEPRE
>Mature_302_residues
MRTGSVLANLEVKWLYDVIALEESRSFTLAAKARNISQSSFSRRIQSLEASLGFSIFDRSANPLQLTNRGKIFVGYARNM
LDDMDFQISRIKGLNNTTQKIRIDAAPSLSVLLLPEIIAGYTDRKNKTFHVESINVNDAVFNLKEGKSDFILSFYNEELM
NYPFINHKIFDSYLHLVSPCDEHGRPLFHLHRGVLPLMKYANDSYMGRQVNQVIDRTPEITFSLTFVSSMSELLKRMILN
GDGVGWLPQYSIQRELDEGRLTILDESLSLPIGAWLYRSGSRLNQAAERFWQHIKTRNEPRE

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=295, Percent_Identity=44.7457627118644, Blast_Score=268, Evalue=3e-73,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34672; Mature: 34672

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTGSVLANLEVKWLYDVIALEESRSFTLAAKARNISQSSFSRRIQSLEASLGFSIFDRS
CCCCCEEEEEEHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHHHHHHHCCHHEECCC
ANPLQLTNRGKIFVGYARNMLDDMDFQISRIKGLNNTTQKIRIDAAPSLSVLLLPEIIAG
CCCEEEECCCCEEEEEHHHHHHCCCHHHHHHCCCCCCCEEEEEECCCCCHHEEHHHHHCC
YTDRKNKTFHVESINVNDAVFNLKEGKSDFILSFYNEELMNYPFINHKIFDSYLHLVSPC
CCCCCCCEEEEEEECCCHHEEEECCCCCCEEEEHHHHHHHCCCCCCHHHHHHHHHHHCCC
DEHGRPLFHLHRGVLPLMKYANDSYMGRQVNQVIDRTPEITFSLTFVSSMSELLKRMILN
CHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHC
GDGVGWLPQYSIQRELDEGRLTILDESLSLPIGAWLYRSGSRLNQAAERFWQHIKTRNEP
CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
RE
CC
>Mature Secondary Structure
MRTGSVLANLEVKWLYDVIALEESRSFTLAAKARNISQSSFSRRIQSLEASLGFSIFDRS
CCCCCEEEEEEHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHHHHHHHCCHHEECCC
ANPLQLTNRGKIFVGYARNMLDDMDFQISRIKGLNNTTQKIRIDAAPSLSVLLLPEIIAG
CCCEEEECCCCEEEEEHHHHHHCCCHHHHHHCCCCCCCEEEEEECCCCCHHEEHHHHHCC
YTDRKNKTFHVESINVNDAVFNLKEGKSDFILSFYNEELMNYPFINHKIFDSYLHLVSPC
CCCCCCCEEEEEEECCCHHEEEECCCCCCEEEEHHHHHHHCCCCCCHHHHHHHHHHHCCC
DEHGRPLFHLHRGVLPLMKYANDSYMGRQVNQVIDRTPEITFSLTFVSSMSELLKRMILN
CHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHC
GDGVGWLPQYSIQRELDEGRLTILDESLSLPIGAWLYRSGSRLNQAAERFWQHIKTRNEP
CCCCCCCCCHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
RE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]