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The map label for this gene is ychF [H]

Identifier: 238895304

GI number: 238895304

Start: 3187804

End: 3188895

Strand: Direct

Name: ychF [H]

Synonym: KP1_3361

Alternate gene names: 238895304

Gene position: 3187804-3188895 (Clockwise)

Preceding gene: 238895303

Following gene: 238895330

Centisome position: 60.74

GC content: 56.59

Gene sequence:

>1092_bases
ATGGGATTCAAATGCGGTATCGTCGGTTTGCCCAACGTCGGCAAATCCACCCTGTTCAATGCGCTCACCAAAGCGGGTAT
TGAAGCGGCCAACTTCCCCTTCTGTACCATTGAGCCGAACACCGGTGTCGTACCGATGCCCGATCCGCGTCTGGACAAGC
TGGCTGAAATCGTCAAACCGCAGCGCATCCTGCCGACCACCATGGAGTTCGTGGATATCGCGGGCCTGGTGAAAGGCGCG
TCCAAAGGTGAAGGTCTTGGCAACCAGTTTCTGACCAACATCCGTGAAACCGAAGCCATCGGCCATGTGGTTCGCTGCTT
TGAAAACGATAATATTATTCACGTCGCGGGGAAAGTGAACCCGGCGGAAGATATCGACGTTATCAATACCGAACTGGCGC
TGTCTGACCTTGATACCTGCGAACGCGCGATTCACCGCGTCTCCAAAAAAGCCAAAGGCGGCGATAAAGACGCGAAGGTT
GAGCTGGCCGCGCTGGAAAAATGCCTGCCGCAGCTGGAAAACGCCGGTATGCTGCGTGCGCTGGATCTGACCAAAGAAGA
GAAAGAGGCCATCCGCTATCTGAGCTTCCTGACCCTGAAGCCGACCATGTACATCGCGAACGTCAATGAAGACGGTTTCG
AGAACAACCCGTACCTCGATCAGGTTCGCGCCATCGCCGAGCAGGAAGGGTCTGTGGTGGTGCCGGTGTGCGCCGCCGTT
GAAGCGGACATCGCCGAGCTGGACGATGAAGAGCGTGACGAGTTCATGGCTGAGCTGGGCCTCGAAGAGCCGGGCCTGAA
CCGCGTGATCCGCGCCGGTTACGCTCTGCTGAACCTGCAGACCTACTTCACCGCGGGCGTGAAAGAAGTTCGCGCATGGA
CCATCCCGGTGGGAGCGACCGCGCCGCAGGCAGCCGGTAAGATCCACACCGACTTCGAAAAAGGCTTTATCCGCGCGCAG
ACCATCGCTTATGAAGACTTCATTGCCTACAAAGGCGAACAGGGCGCGAAAGAAGCGGGTAAAATGCGTGCTGAAGGTAA
AGACTACATCGTGAAAGATGGCGATGTGATGAACTTCCTGTTCAACGTCTAA

Upstream 100 bases:

>100_bases
TTTTTGCCGCGCACCGTGTATAATAGGCAAAGCTATTCAATTTTCTGCAATCTGTTCCTTGTAACAGATTGATTATCCAA
AGATTAAGGTGATTTAAATC

Downstream 100 bases:

>100_bases
TCCCACTGGCTGGCGTTTTCGCCGCCACCGCGCAAAAAAATCCACGCAGCGGCGTGGATTTTTTTTTACCCAGGCGACAC
GCTACTCCACAATATGGGTA

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDKLAEIVKPQRILPTTMEFVDIAGLVKGA
SKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVAGKVNPAEDIDVINTELALSDLDTCERAIHRVSKKAKGGDKDAKV
ELAALEKCLPQLENAGMLRALDLTKEEKEAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVRAIAEQEGSVVVPVCAAV
EADIAELDDEERDEFMAELGLEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQ
TIAYEDFIAYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFLFNV

Sequences:

>Translated_363_residues
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDKLAEIVKPQRILPTTMEFVDIAGLVKGA
SKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVAGKVNPAEDIDVINTELALSDLDTCERAIHRVSKKAKGGDKDAKV
ELAALEKCLPQLENAGMLRALDLTKEEKEAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVRAIAEQEGSVVVPVCAAV
EADIAELDDEERDEFMAELGLEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQ
TIAYEDFIAYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFLFNV
>Mature_362_residues
GFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDKLAEIVKPQRILPTTMEFVDIAGLVKGAS
KGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVAGKVNPAEDIDVINTELALSDLDTCERAIHRVSKKAKGGDKDAKVE
LAALEKCLPQLENAGMLRALDLTKEEKEAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVRAIAEQEGSVVVPVCAAVE
ADIAELDDEERDEFMAELGLEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQT
IAYEDFIAYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFLFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=369, Percent_Identity=44.7154471544715, Blast_Score=307, Evalue=8e-84,
Organism=Homo sapiens, GI58761502, Length=218, Percent_Identity=40.3669724770642, Blast_Score=159, Evalue=6e-39,
Organism=Escherichia coli, GI1787454, Length=363, Percent_Identity=94.4903581267218, Blast_Score=707, Evalue=0.0,
Organism=Escherichia coli, GI1789574, Length=127, Percent_Identity=30.7086614173228, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17509631, Length=365, Percent_Identity=41.3698630136986, Blast_Score=291, Evalue=5e-79,
Organism=Saccharomyces cerevisiae, GI6319499, Length=368, Percent_Identity=39.6739130434783, Blast_Score=257, Evalue=2e-69,
Organism=Saccharomyces cerevisiae, GI6321773, Length=378, Percent_Identity=34.6560846560847, Blast_Score=196, Evalue=4e-51,
Organism=Saccharomyces cerevisiae, GI6321649, Length=145, Percent_Identity=37.9310344827586, Blast_Score=78, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24640873, Length=366, Percent_Identity=43.1693989071038, Blast_Score=300, Evalue=9e-82,
Organism=Drosophila melanogaster, GI24640877, Length=366, Percent_Identity=43.1693989071038, Blast_Score=300, Evalue=9e-82,
Organism=Drosophila melanogaster, GI24640875, Length=366, Percent_Identity=43.1693989071038, Blast_Score=300, Evalue=9e-82,
Organism=Drosophila melanogaster, GI24640879, Length=328, Percent_Identity=40.8536585365854, Blast_Score=246, Evalue=2e-65,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 39624; Mature: 39493

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS00443 GATASE_TYPE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDKLAEIVKP
CCEEECEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCC
QRILPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVAGKVN
CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PAEDIDVINTELALSDLDTCERAIHRVSKKAKGGDKDAKVELAALEKCLPQLENAGMLRA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
LDLTKEEKEAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVRAIAEQEGSVVVPVCAAV
ECCCHHHHHHHHHHHHHEECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHH
EADIAELDDEERDEFMAELGLEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTIPVGAT
HHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC
APQAAGKIHTDFEKGFIRAQTIAYEDFIAYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFL
CCHHCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEECCHHHHHH
FNV
HCC
>Mature Secondary Structure 
GFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDKLAEIVKP
CEEECEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCC
QRILPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVAGKVN
CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PAEDIDVINTELALSDLDTCERAIHRVSKKAKGGDKDAKVELAALEKCLPQLENAGMLRA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
LDLTKEEKEAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVRAIAEQEGSVVVPVCAAV
ECCCHHHHHHHHHHHHHEECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHH
EADIAELDDEERDEFMAELGLEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTIPVGAT
HHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC
APQAAGKIHTDFEKGFIRAQTIAYEDFIAYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFL
CCHHCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEECCHHHHHH
FNV
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]