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The map label for this gene is nlpC [H]

Identifier: 238895220

GI number: 238895220

Start: 3102654

End: 3103118

Strand: Reverse

Name: nlpC [H]

Synonym: KP1_3268

Alternate gene names: 238895220

Gene position: 3103118-3102654 (Counterclockwise)

Preceding gene: 238895221

Following gene: 238895219

Centisome position: 59.12

GC content: 61.51

Gene sequence:

>465_bases
ATGCGCTTCTGGTTCATGTTGGCGGCGGCGTTAATTTTAGCCGGCTGCAGCAGCCATCGGGCACCGCCGCCGAATCCTCG
GCTGGCAGACTCCATTACGGTGGTGGCGAATCTGAACGAGCAGCTGCGCAGCTGGCGCGGCGCGCCGTATCGCTACGGCG
GCATGACGCCGCTCGGCGTTGACTGCTCCGGCTTCGTGGTGCGCACGTTTCGCGATAAATTTGCCCTCCAGCTGCCGCGT
GAAACCCGCGAGCAGGCGGAAATCGGCACCCGCATCGATAAGCGCGATCTGCTGCCCGGCGATCTGGTGTTCTTCAAAAC
CGGCTCAGGGGAGAGCGGTTTGCACGTTGGCATCTACGATACCGACAACCAGTTTATTCACGCCTCCACCAGCCAGGGCG
TCACCCGTTCCTCGCTGGATAACGTCTACTGGAACAAAAAGTTCTGGCAGGCGCGGCGAATCTGA

Upstream 100 bases:

>100_bases
GCTCATCGCGTCACAGTAGCACGCAGTTATCTTGTCACTATATTGATAAACAAGCTAAATTATTGCGATAAAGAGACTAG
GGACAGAGGGATCATCTGAA

Downstream 100 bases:

>100_bases
CGTCATTCAGAAGCGAGAGGGAAGCGAACGCTTCCCTTTTTTATGCCGATAACCCTGCACTCCGCCCGTGTTAATCCGCT
GTTCCAGGCACTACACTGGA

Product: lipoprotein

Products: NA

Alternate protein names: ORF-17 [H]

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MRFWFMLAAALILAGCSSHRAPPPNPRLADSITVVANLNEQLRSWRGAPYRYGGMTPLGVDCSGFVVRTFRDKFALQLPR
ETREQAEIGTRIDKRDLLPGDLVFFKTGSGESGLHVGIYDTDNQFIHASTSQGVTRSSLDNVYWNKKFWQARRI

Sequences:

>Translated_154_residues
MRFWFMLAAALILAGCSSHRAPPPNPRLADSITVVANLNEQLRSWRGAPYRYGGMTPLGVDCSGFVVRTFRDKFALQLPR
ETREQAEIGTRIDKRDLLPGDLVFFKTGSGESGLHVGIYDTDNQFIHASTSQGVTRSSLDNVYWNKKFWQARRI
>Mature_154_residues
MRFWFMLAAALILAGCSSHRAPPPNPRLADSITVVANLNEQLRSWRGAPYRYGGMTPLGVDCSGFVVRTFRDKFALQLPR
ETREQAEIGTRIDKRDLLPGDLVFFKTGSGESGLHVGIYDTDNQFIHASTSQGVTRSSLDNVYWNKKFWQARRI

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788001, Length=154, Percent_Identity=77.2727272727273, Blast_Score=244, Evalue=2e-66,
Organism=Escherichia coli, GI1788501, Length=169, Percent_Identity=41.4201183431953, Blast_Score=137, Evalue=4e-34,
Organism=Escherichia coli, GI1787944, Length=112, Percent_Identity=36.6071428571429, Blast_Score=77, Evalue=4e-16,
Organism=Escherichia coli, GI1786421, Length=130, Percent_Identity=37.6923076923077, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 17378; Mature: 17378

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFWFMLAAALILAGCSSHRAPPPNPRLADSITVVANLNEQLRSWRGAPYRYGGMTPLGV
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCEECCCCCCCCC
DCSGFVVRTFRDKFALQLPRETREQAEIGTRIDKRDLLPGDLVFFKTGSGESGLHVGIYD
CCCCHHHHHHHHHHHEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEE
TDNQFIHASTSQGVTRSSLDNVYWNKKFWQARRI
CCCCEEEECCCCCCCHHHHHHHHCCHHHHHHCCC
>Mature Secondary Structure
MRFWFMLAAALILAGCSSHRAPPPNPRLADSITVVANLNEQLRSWRGAPYRYGGMTPLGV
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCEECCCCCCCCC
DCSGFVVRTFRDKFALQLPRETREQAEIGTRIDKRDLLPGDLVFFKTGSGESGLHVGIYD
CCCCHHHHHHHHHHHEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEE
TDNQFIHASTSQGVTRSSLDNVYWNKKFWQARRI
CCCCEEEECCCCCCCHHHHHHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]